View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5367-Insertion-1 (Length: 168)
Name: NF5367-Insertion-1
Description: NF5367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5367-Insertion-1 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 9e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 9e-87
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 40617007 - 40616846
Alignment:
| Q |
7 |
atgaattacggctgaataaaaatgatggtgtagtaccagttacatggactatggcttgaaagaatactcaagtagtggctaatatatataattaataaga |
106 |
Q |
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| T |
40617007 |
atgaattacggctgaataaaaatgatggtgtagtaccagttacatggactatggcttgaaagaatactcaagtagtggctaatatatataattaataaga |
40616908 |
T |
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| Q |
107 |
ctaagcttaatttgcataaggtaaaattaagcttgtgtgtgttatttcgtcattttgttggt |
168 |
Q |
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| T |
40616907 |
ctaagcttaatttgcataaggtaaaattaagcttgtgtgtgttatttcgtcattttgttggt |
40616846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 40627706 - 40627646
Alignment:
| Q |
19 |
tgaataaaaatgatggtgtagtaccagttacatggactatggcttgaaagaatactcaagta |
80 |
Q |
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| T |
40627706 |
tgaatacagatgatggtgtagtaccagttacatggtctatggctt-aaaaattactcaagta |
40627646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 40610406 - 40610364
Alignment:
| Q |
99 |
taataagactaagcttaatttgcataaggtaaaattaagcttg |
141 |
Q |
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| T |
40610406 |
taataagaacaagcttaatttgcataaggttaaattaagcttg |
40610364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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