View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5367_high_1 (Length: 556)
Name: NF5367_high_1
Description: NF5367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5367_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 6e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 11451886 - 11452079
Alignment:
| Q |
24 |
tcatcagctacatcgaatttgaccgcggttatccacaatatcaagagtcgtcaatgtgtctccatcgtgattttaaaaagctataaatcctagtttttgg |
123 |
Q |
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| T |
11451886 |
tcatcagctacatcgaatttgaccgcggttatccacaatatcaagagtcgtcaatgtgtctccaccgtgattttaaaaggctataaatcctagtttttgg |
11451985 |
T |
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| Q |
124 |
tcaatggtacgacaccatcatggaaacaaacaatcactacatctatcggtgtcgtgtaggtgtctgataccaaacagcctttaatcttaagttg |
217 |
Q |
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| T |
11451986 |
tcaatggtatgaccccgtcatggaaacaaacaatcactacatctatcggtgtcgtgtaggtgtttgataccaaacagcctttaatcttaagttg |
11452079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 425 - 535
Target Start/End: Original strand, 11452286 - 11452396
Alignment:
| Q |
425 |
tactagttaccatcataatgagaaggaggaaaagcattgggaataagaaaaagctggtagaacatggcagcagagaagagaagaagaggaagtgcgtagg |
524 |
Q |
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| T |
11452286 |
tactagttaccatcataatgagaaggaggaaaagcattgggaataagaaaaagctggtagaacatggcagcagagaagagaagaagaggaagtgcgtagg |
11452385 |
T |
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| Q |
525 |
ctttgatgatg |
535 |
Q |
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| T |
11452386 |
ctttgatgatg |
11452396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 11452146 - 11452224
Alignment:
| Q |
284 |
accatttagattcaagattgacataagcctccttcacttcatcaatcgaactatacatcttaattctcagaactgcatt |
362 |
Q |
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| T |
11452146 |
accatttagattcaagattgacataagcttccttcacttcatcaatcgaactatacatcttaattctcagaactgcatt |
11452224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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