View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5367_high_12 (Length: 367)
Name: NF5367_high_12
Description: NF5367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5367_high_12 |
 | |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 22 - 347
Target Start/End: Original strand, 33814557 - 33814882
Alignment:
| Q |
22 |
catcaagaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatg |
121 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33814557 |
catcaaaaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatg |
33814656 |
T |
|
| Q |
122 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg |
221 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33814657 |
gttacaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg |
33814756 |
T |
|
| Q |
222 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
321 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33814757 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaagtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
33814856 |
T |
|
| Q |
322 |
aaatattctcaccggtggtgatgatg |
347 |
Q |
| |
|
||||||||||||||||||||| |||| |
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|
| T |
33814857 |
aaatattctcaccggtggtgaagatg |
33814882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 347
Target Start/End: Original strand, 33809767 - 33809964
Alignment:
| Q |
155 |
aaaggagaatgagacgtatgacctggtaaaatta--ccagatggaaag-agggcattgaaaaa-taaatgggtgttcaaact-caagtctgaagagaaca |
249 |
Q |
| |
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||||| |||||||| || || |||||||||||| |||||||||||| ||||| || ||||| ||||||||| |||||||| ||| | | ||| || || |
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| T |
33809767 |
aaaggggaatgagaggtttggcctggtaaaattttcccagatggaaaggagggcttttaaaaaataaatgggttttcaaacttcaattttaaaggga-ca |
33809865 |
T |
|
| Q |
250 |
acccaaaccccaggtacaaagcacgaattgttgtgaaggggtg-ccatcaaaagaaaggcattgattttgaagaaatattctcaccggtggtgatgatg |
347 |
Q |
| |
|
|||||| ||||| |||||||||| |||||| |||||||||||| || ||||||||||||||||||||||||| |||| || || |||||||||| |||| |
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|
| T |
33809866 |
acccaacccccaagtacaaagcatgaattggtgtgaaggggtgcccttcaaaagaaaggcattgattttgaaaaaatgttttccccggtggtgaagatg |
33809964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 347
Target Start/End: Original strand, 657 - 982
Alignment:
| Q |
22 |
catcaagaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
657 |
catcaagaagatacttctcaggtgaatatgtaaacttcacaaaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg |
756 |
T |
|
| Q |
122 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg |
221 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
757 |
gttgcaatccatggaagaagagatgcaatccctaaaggagaatgaaacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg |
856 |
T |
|
| Q |
222 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
857 |
gtgttcaaactcaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
956 |
T |
|
| Q |
322 |
aaatattctcaccggtggtgatgatg |
347 |
Q |
| |
|
||||||||||||||||||||| |||| |
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|
| T |
957 |
aaatattctcaccggtggtgaagatg |
982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 339
Target Start/End: Complemental strand, 9754594 - 9754277
Alignment:
| Q |
22 |
catcaagaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
9754594 |
catcaagaagatacttctcaggtgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg |
9754495 |
T |
|
| Q |
122 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg |
221 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
9754494 |
gttgtaatccatggaagaagagatgcaatccctaaaggagaatgagacgtatgacctggtaaaattgccaaatggaaagagggcattgaaaaataaatgg |
9754395 |
T |
|
| Q |
222 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
321 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9754394 |
gtgttcaaacttaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
9754295 |
T |
|
| Q |
322 |
aaatattctcaccggtgg |
339 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
9754294 |
aaatattctcatcggtgg |
9754277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 22 - 347
Target Start/End: Complemental strand, 54969490 - 54969165
Alignment:
| Q |
22 |
catcaagaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
54969490 |
catcaagaagatacttctcaggtgaatatgtaaacttcaccgaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg |
54969391 |
T |
|
| Q |
122 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg |
221 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54969390 |
gttgcaatccatggaagaagagatgcaatccctaaaggagaatgacacgtatgacctggtcaaattaccagatggaaagagggcattgaaaaataaatgg |
54969291 |
T |
|
| Q |
222 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
321 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
54969290 |
gtgtttaaactcaagtctgaagagaacaacccaaatcccagatacaaggcacgaatagtcgtgaaggggtgccatcaaaagaaagacgttgattttgaag |
54969191 |
T |
|
| Q |
322 |
aaatattctcaccggtggtgatgatg |
347 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
54969190 |
aaatattctcaccggtggtgaagatg |
54969165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 33 - 347
Target Start/End: Complemental strand, 4284292 - 4283981
Alignment:
| Q |
33 |
tacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatggttgcaatcca |
132 |
Q |
| |
|
||||||||| |||| || ||||||| ||| | ||| |||||||||||||| |||||||||| |||||||||||||||||| |||||||| |||||| || |
|
|
| T |
4284292 |
tacttctcacatgaaaatataaattttactaatgaaagggaacctcaaagcatcatggaagccatagagacaaccaataagcaaaaatggctgcaatgca |
4284193 |
T |
|
| Q |
133 |
tggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgggtgttcaaact |
232 |
Q |
| |
|
| ||||||| ||| ||||||||||||||| | || |||||| |||||||||||| ||||||| |||||||||||||||||| |||||||||| || |
|
|
| T |
4284192 |
ttcaagaagaaatgccatccctaaaggagaaccaaacatatgacttggtaaaattactgaatggaaatagggcattgaaaaataaacgggtgttcaagct |
4284093 |
T |
|
| Q |
233 |
caagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctca |
332 |
Q |
| |
|
|| ||||||| |||||||| ||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4284092 |
catgtctgaatagaacaactcaaaccctaggtacaaagcacga---gtcgtgaaggaatgccatcaaaagaaaggcattgattttgaagaaaaattctca |
4283996 |
T |
|
| Q |
333 |
ccggtggtgatgatg |
347 |
Q |
| |
|
|| ||| ||| |||| |
|
|
| T |
4283995 |
ccagtgatgaagatg |
4283981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 13563767 - 13563709
Alignment:
| Q |
22 |
catcaagaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaa |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
13563767 |
catcaagaagatacttctcaggtgaatatgtaaacttcactaaggaaggcgaacctcaa |
13563709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 142 - 347
Target Start/End: Complemental strand, 4837704 - 4837499
Alignment:
| Q |
142 |
agatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgggtgttcaaactcaagtctga |
241 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
4837704 |
agatgcaatccctaaaggagaatgagacgtatgatctggtaaaattaccagatggaaagagggcgttgaaaaacaagtgggtgttcaaactcaagtctga |
4837605 |
T |
|
| Q |
242 |
agagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctcaccggtggtg |
341 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4837604 |
agagaacaacccaaatcccatatacaaagcacaaatagtcgtgaaggggtgccatcgaaagaaaggcattgattttgaagaaatattctcaccagtggtg |
4837505 |
T |
|
| Q |
342 |
atgatg |
347 |
Q |
| |
|
| |||| |
|
|
| T |
4837504 |
aggatg |
4837499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 4837794 - 4837703
Alignment:
| Q |
22 |
catcaagaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataag |
113 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4837794 |
catcaaaaagatacttctcagttgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataag |
4837703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 197 - 341
Target Start/End: Complemental strand, 1130227 - 1130083
Alignment:
| Q |
197 |
aaagagggcattgaaaaataaatgggtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccat |
296 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |||||| ||||| |
|
|
| T |
1130227 |
aaagaggtcattgaaaaataattggatgttcaaactcaagtctgaagagaacaagttgaaccccgggtacaaagcacgaattgtcgctaaggggcgccat |
1130128 |
T |
|
| Q |
297 |
caaaagaaaggcattgattttgaagaaatattctcaccggtggtg |
341 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
1130127 |
caaaataaaggcaatgattttgaagaaatattctcatcggtggtg |
1130083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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