View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5367_high_2 (Length: 532)
Name: NF5367_high_2
Description: NF5367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5367_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 34 - 512
Target Start/End: Complemental strand, 6545797 - 6545310
Alignment:
| Q |
34 |
tgtgtcagtagatgcagtaatgtgaaatcaacaagacattttgttcatgttccgtgactttgttggttctttgtggcatttagtgtggaattgactaggt |
133 |
Q |
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| T |
6545797 |
tgtgtcagtagatgcagtgatgtgaaatcaacaagacattttgttcctgttctgtgactttgttggttctttgtggcatttagtgcggaattggctaggt |
6545698 |
T |
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| Q |
134 |
ttttcttcggc---------ataataggtatatcggatcagttggtttagtttggcaatttgatagggttctcaagagtatgcgatccttattaactctc |
224 |
Q |
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| T |
6545697 |
ttttctttggctcatccagcagaataggtatatcggatcagttggtttagtttgacactttggtagggttctcaagagtatgtgatccttattaactctc |
6545598 |
T |
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| Q |
225 |
atacgactagcgtgtacttgagttatttaaaaggaaatgaacgacaagatttttaataatacaacaaactatttacctaaacttctagagaatatta-gt |
323 |
Q |
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| T |
6545597 |
atacgactagcgtgtacttgagttatttaaaagaaaatgaacaacaagatttttaataatacaacaggctatttacctaaacttctagagaatattaagt |
6545498 |
T |
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| Q |
324 |
tacttacnnnnnnnngaagtaagtaagctattaagttacttacttttgtgtggctaaaggtaaaatttgcaagtattacttttggattttgttatcacaa |
423 |
Q |
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| T |
6545497 |
tacttacttttttt-gaagtaagtaagctattaagttacttacttttgtgtggctaaaggtaaaatttgcaagtattgcttttggttttggttatcacaa |
6545399 |
T |
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| Q |
424 |
ccggcacatgaatcctcttatgtgcttaggtattggatacttttgttcattttgttttccgctccccgttcaaactatgttgatgatgt |
512 |
Q |
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| T |
6545398 |
ccggcacatgaatcctcttatgtgcttaggtattggatacttttgttccttttgttttccgttctccgttcaaactatgttgctgatgt |
6545310 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 450
Target Start/End: Complemental strand, 33555510 - 33555424
Alignment:
| Q |
366 |
cttttgtgtggctaaaggtaaaattt-gcaagtattacttttggattttg-ttatcacaaccggcacatgaatcctcttatgtgctt |
450 |
Q |
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| T |
33555510 |
cttttgtgtggctaaagacaaaattttgcaagcattgcttttgagttttgattatcacaagtgacacatgaatcctcttatgtgctt |
33555424 |
T |
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