View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5367_high_22 (Length: 342)
Name: NF5367_high_22
Description: NF5367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5367_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 20670545 - 20670867
Alignment:
| Q |
1 |
caactccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcgtaaacaaatgggtaagcatcttatcaat |
100 |
Q |
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| T |
20670545 |
caactccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcataaacaaatgggtaagcatcttatcaat |
20670644 |
T |
|
| Q |
101 |
ctcacatccatcacttagcctaacactcttcatccctcaacagcccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccct |
200 |
Q |
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||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20670645 |
ctcccatccatcacttagcctaacactcttcattcctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccct |
20670744 |
T |
|
| Q |
201 |
caacgtctcgtctacactgacctcctcctcctccctcgttactctcgtatacctactcttctccccggtaaaaccatcaccgttaccgataacttccccg |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20670745 |
caacgtctcgtctacgctgacctcctcctcctccctcgttactctcgtatccctactcttctccccggtaaaaccatcaccgttaccgataacttccccg |
20670844 |
T |
|
| Q |
301 |
gtaatttcacccttgatgatgtc |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
20670845 |
gtaatttcacccttgatgatgtc |
20670867 |
T |
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