View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5367_high_23 (Length: 338)
Name: NF5367_high_23
Description: NF5367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5367_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 28 - 322
Target Start/End: Original strand, 33804212 - 33804505
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33804212 |
caaaggagctcctaagaaagataagcaaaacattcgatcgacaaggcggtccccttcgctatgggagattgttgactcccaggagcaagagacacaaggt |
33804311 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33804312 |
tcacaaacaagatcaacagggacgagtaggaagagtgcacgaaaaagcaacatgtcacctactcctcctaagccaactcc-aaaaacccgaacaagccaa |
33804410 |
T |
|
| Q |
228 |
caccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
||||||||||| |||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||| |
|
|
| T |
33804411 |
caccggttaaagttaacataccacacaaaaaccaaatcccaatttggatgcataaatttattgaaaaggttacaaatgtacccggtgatggccat |
33804505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 28 - 322
Target Start/End: Complemental strand, 45908610 - 45908317
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||||||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
45908610 |
caaaggagctcataagaaagataagcaaaac-ttcgatcgacaaggcggtccccttcgctatgggagattgttgactcccaggagcaagagacacagggt |
45908512 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
||| | |||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45908511 |
tcatagacaagatcaacagggacgagtaggaagagtgcacgaaaaagcaacatgtcacctactcttcctaagccaactccaaaaaacccggacaagccaa |
45908412 |
T |
|
| Q |
228 |
caccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
45908411 |
caccggttaaagtcaatataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacagatgtacccggtgatggccat |
45908317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 28 - 322
Target Start/End: Original strand, 50517264 - 50517559
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | |||| ||| |
|
|
| T |
50517264 |
caaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgctatgggagattgttgactcccaggagcaagagccacagggt |
50517363 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
50517364 |
tcacagacaagatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactcgtcctaagccaactccaaaaaacccgaacaagccaa |
50517463 |
T |
|
| Q |
228 |
ca-ccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
|| ||| ||||| | ||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| | ||||| |||| |
|
|
| T |
50517464 |
cacccgattaaagtaaatatacgacacaaagaccaaatcccaatttgaatgcataaatttattgaaaagggtacagatgtacccggtgatggccat |
50517559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 28 - 322
Target Start/End: Complemental strand, 44710841 - 44710566
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
44710841 |
caaaggagctcctaagaaagataagcaaagcattcgatcgacaaggtggtcccctttgccatgg-------------------agcaagggacacaaggt |
44710761 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44710760 |
tcacagacaagatcaacagggacgaataggaagagtgcatggaaaagcaacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
44710661 |
T |
|
| Q |
228 |
caccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
44710660 |
caccggttaaagttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacccggtgatggccat |
44710566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 298
Target Start/End: Complemental strand, 12865541 - 12865284
Alignment:
| Q |
41 |
aagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggttcacaaacaagat |
140 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| || ||| ||||| |||| |||||||| || |
|
|
| T |
12865541 |
aagaaagataagcaaaccattcgatcgataaggtggtccccttcgctatgggagattgttgactcccaagaacaaaaaacacagggttgacaaacaaaat |
12865442 |
T |
|
| Q |
141 |
caagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaacaccggttaaatt |
240 |
Q |
| |
|
||| |||||| ||||| || |||||||| ||||| ||||||| |||||||||| || ||||| ||||||||| ||||| |||||| ||| ||||||| | |
|
|
| T |
12865441 |
caacagggacaagtagaaaaagtgcatgaaaaagaaacatgtctcctactcctcttatgccaattccaaaaaatccgaagaagccagcactggttaaagt |
12865342 |
T |
|
| Q |
241 |
taatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggtt |
298 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |
|
|
| T |
12865341 |
ccacataccacacaaagaccaaatcccaatttggatgcatgaatttattagaaaggtt |
12865284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 33 - 322
Target Start/End: Complemental strand, 20234380 - 20234091
Alignment:
| Q |
33 |
gagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggttcaca |
132 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||| |
|
|
| T |
20234380 |
gagctcctaagaaagataagcaaaacattcgatcgacaaggcggtcccctttgctatgggagattgttgactcacaggagcaagagacacagggttcaca |
20234281 |
T |
|
| Q |
133 |
aacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaacaccg |
232 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20234280 |
tacaagatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctgctcctcctaagctaactccaaaaaacccgaacaagccaacaccg |
20234181 |
T |
|
| Q |
233 |
gttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
|||||| | || |||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
20234180 |
gttaaagtcaacataccacacaaagaccaaatcccaatttggatatataaatttattgaaagggttacagatgtacccgatgatggccat |
20234091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 322
Target Start/End: Complemental strand, 23351217 - 23350923
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||| ||| |
|
|
| T |
23351217 |
caaaggagctcccaagaaagataagcaaagcattcgatcgacaaggcggtccccttcactatgggagattgttgactcccaagagcaagagacacagggt |
23351118 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23351117 |
tcacagacaagatcaacagggaccagtaggaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
23351018 |
T |
|
| Q |
228 |
caccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
|| |||||||| | || ||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
23351017 |
catcggttaaagtcaacatatcacataaagaccaaatctcaatttggatgcataaatttattgaaaaggttacagatgtacctggtgatggccat |
23350923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 322
Target Start/End: Original strand, 25762615 - 25762908
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||| | ||| |
|
|
| T |
25762615 |
caaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgctatgggagattgttgactccaaggagcaagagacatagggt |
25762714 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25762715 |
tcacagacaagatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaactccaaaaaactcgaacaagccaa |
25762814 |
T |
|
| Q |
228 |
caccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
|||||| |||| | || |||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
25762815 |
caccgg-taaagtcaacatacaacacaaagaccaaatcccaatttggatgcataactttattgaaaaggttacagatgtacccggtgatggccat |
25762908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 28 - 322
Target Start/End: Complemental strand, 34828394 - 34828103
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| |||||| ||| |
|
|
| T |
34828394 |
caaaggagctcctaagaaagataagcaaagc---cgatcgacaaggcggtccccttcgctatgggagattgttgactcccatgagcaagagacacagggt |
34828298 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
||| | |||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34828297 |
tcatagacaagatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctacttttcctaagccaactccaaaaaacccgaacaagccaa |
34828198 |
T |
|
| Q |
228 |
caccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
34828197 |
caccgattaaattcaacataccacacaaagaccaaatcccaattttgatgcataaatttattgaaaaggttacagatgtacctggtgatggccat |
34828103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 28 - 322
Target Start/End: Complemental strand, 16491958 - 16491664
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
16491958 |
caaaggagctccaaagaaagataagcaaagcattcgatcgacaaggcggtccccttccctatgggagattgttgactcccaggagcaagagacacagggt |
16491859 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
|||| |||| ||||| |||||||||||| ||||||||| |||||||| ||||||| | ||||||||||||||||| ||| ||||| ||||| ||| ||| |
|
|
| T |
16491858 |
tcactgacaaaatcaacagggacgagtagaaagagtgcacggaaaagcaacatgtctcatactcctcctaagccaattcccaaaaatccgaagaagtcaa |
16491759 |
T |
|
| Q |
228 |
caccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
|||| |||||| | |||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||||| | ||||| |||| |
|
|
| T |
16491758 |
cacccgttaaagtctatataccacacaaagaccaaatcccaatttggatgcatgactttattgaaaaggttagggatgtacccggtgatggccat |
16491664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 31058667 - 31058603
Alignment:
| Q |
232 |
ggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaagg |
296 |
Q |
| |
|
||||||| | || |||||||||||||||||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
31058667 |
ggttaaagtcaacataccacacaaagaccaaatcccatattggatgcatgaatttattgaaaagg |
31058603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 31058796 - 31058672
Alignment:
| Q |
80 |
cctttgctatgggagattgttgactcccaggagcaagggacacaaggttcacaaacaagat-caagagggacgagtaggaagagtgcatggaaaagcgac |
178 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||| ||||| | |||||| | || || ||| |||||| ||||| | |||||| |||||||| || |
|
|
| T |
31058796 |
ccttcgctctgggagattgttgactcccaggatcaacaaacacatgcttcacataaaaaattcaacagggacaagtagagaaagtgcacggaaaagcaac |
31058697 |
T |
|
| Q |
179 |
atgtcacctactcctcctaagccaa |
203 |
Q |
| |
|
||||| |||| |||||||||||||| |
|
|
| T |
31058696 |
atgtctcctaatcctcctaagccaa |
31058672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 31043428 - 31043377
Alignment:
| Q |
245 |
ataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaagg |
296 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
31043428 |
ataccacacaaagaacaaatcccacattggatgcatgaatttattgaaaagg |
31043377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 31043569 - 31043446
Alignment:
| Q |
80 |
cctttgctatgggagattgttgactcccaggagcaagggacacaaggttcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgaca |
179 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| ||| |||| | |||||| |||| |||| |||||| ||||| | |||||| |||||||| ||| |
|
|
| T |
31043569 |
cctttgctctaggagattgttgactcccaggatcaacaaacacgtgcttcacatacaaattcaacagggacaagtagagaaagtgcacggaaaagcaaca |
31043470 |
T |
|
| Q |
180 |
tgtcacctactcctcctaagccaa |
203 |
Q |
| |
|
|||| || |||||||||||||| |
|
|
| T |
31043469 |
tgtcttataatcctcctaagccaa |
31043446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 28 - 322
Target Start/End: Complemental strand, 52970214 - 52969920
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| ||| |||||| ||| |
|
|
| T |
52970214 |
caaatgagctcctaagaaagataagcaaaacattcgatcgacaaggcggtccccttcgctatgggagattgttgactcccatgagaaagagacacatggt |
52970115 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| || |
|
|
| T |
52970114 |
tcacagacaagatcaacagggacgagtaggaagagtgcacagaaaagcaacatgtcacctactcctactaagtcaactccaaaaaacccgaacaagctaa |
52970015 |
T |
|
| Q |
228 |
caccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
||||||||||| | || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
52970014 |
caccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacagatgtacctggtgatggccat |
52969920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 322
Target Start/End: Original strand, 48095574 - 48095868
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||| | ||||||||||||||| |||||||||||| ||| ||||||||| ||||||| |||||||||| ||||||||||||| |||||| ||| |
|
|
| T |
48095574 |
caaaggagctcctgagaaagataagcaaaacattcgatcgactaggcggtccccttcgctatggaagattgttgaatcccaggagcaagagacacagggt |
48095673 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48095674 |
tcacagacaagatcaactgggacgagtaagaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaactccaaaaaaccctaacaagccaa |
48095773 |
T |
|
| Q |
228 |
caccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
48095774 |
caccggttaaagtcaatatatcacacaaagaccaaatcctaatttggatgcataagtttattgaaaaggttacagatgtacccgatgatggccat |
48095868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 28 - 280
Target Start/End: Complemental strand, 6160241 - 6159989
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |||||||||| | ||||||| |||||||||||||||||||| |||||||||| |||||| ||| |
|
|
| T |
6160241 |
caaaggagctccaaagaaagataagcaaagcattctatcgacaaggcgatccccttccctatgggagattgttgactcacaggagcaagagacacagggt |
6160142 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
||||| |||| ||||| |||||||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
6160141 |
tcacagacaaaatcaacagggacgagtagaaagagtgcacggaaaagcaacatgtctcctactcctcctaagccaactccaaaaaatccgaagatgccaa |
6160042 |
T |
|
| Q |
228 |
caccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcat |
280 |
Q |
| |
|
|||| |||||| | | |||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
6160041 |
cacccgttaaagtcgacataccacacaaagatcaaatcccaattttgatgcat |
6159989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 26755966 - 26755857
Alignment:
| Q |
200 |
ccaactccaaaaaacccgaacaagccaacaccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggtta |
299 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||| |||||| | | |||||||||||||||||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
26755966 |
ccaattccaaaaaatccgaagaagccaacacccgttaaagtccacataccacacaaagaccaaatcccaatttggatgcaatactttattgaaaaggtta |
26755867 |
T |
|
| Q |
300 |
cagatgtacc |
309 |
Q |
| |
|
|||||||||| |
|
|
| T |
26755866 |
cagatgtacc |
26755857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 28 - 309
Target Start/End: Original strand, 30214375 - 30214656
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
30214375 |
caaatgagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttctctatgggagattgttgactcccaggagcaagagacacatggt |
30214474 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||||| | |||||| |||||||| |||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
30214475 |
tcacagacaagatcaacagggacgagtacaaagagtgcacgaaaaagcaacatgtcatctactcctcctaagtcaactccaaaaaaccccaacaagccaa |
30214574 |
T |
|
| Q |
228 |
caccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacc |
309 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30214575 |
caccggttaaagtcaatataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacagatgtacc |
30214656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 17310240 - 17310076
Alignment:
| Q |
33 |
gagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggttcaca |
132 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
17310240 |
gagctcctaagaaagataagcaaagcattcgatcgacaaggcggtcccctttgctatgggagattgttgactcccaggagcaagagacacagggttcaca |
17310141 |
T |
|
| Q |
133 |
aacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctccta |
197 |
Q |
| |
|
||||||| || |||||||||||||||||||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
17310140 |
tacaagataaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacgtactcctccta |
17310076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 29810858 - 29810935
Alignment:
| Q |
245 |
ataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
|||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
29810858 |
atactacacaaagaccaaattccaatttggatgcataaatttattgaaaaggttacagatgtacccggtgatggccat |
29810935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 28 - 308
Target Start/End: Original strand, 19219508 - 19219788
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||| |||||||||||||||| ||||||| |||||||||| |
|
|
| T |
19219508 |
caaaggagctcctaagaaagataagcaaagcattcgatcgacaaggaggtccctttcgctatggaagattgttgactcccaagagcaagagacacaaggt |
19219607 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19219608 |
tcacaaacaagatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctacttctcctaagccaactccaaaaaacccgaacaagccaa |
19219707 |
T |
|
| Q |
228 |
caccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtac |
308 |
Q |
| |
|
||||| ||||| | || ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19219708 |
caccgtttaaagtcaacataccacacaaagaccaaagttcaatttggatgcataaatttattgaaaaggttatagatgtac |
19219788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 25 - 287
Target Start/End: Complemental strand, 41255205 - 41254943
Alignment:
| Q |
25 |
catcaaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaa |
124 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||| |||| | |
|
|
| T |
41255205 |
catcaaaggagctcctaagaaagataagtaaagcattcgatcgacaaggcagtccccttcgctttgggagattgttgactcccatgagcaagagacatag |
41255106 |
T |
|
| Q |
125 |
ggttcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagc |
224 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41255105 |
ggttcacaaacaagatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcaactactcctcctaagccaactccaaaaaacatgaacaagc |
41255006 |
T |
|
| Q |
225 |
caacaccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaattta |
287 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41255005 |
caacaccggttaaagtcaatataccacacaaagaccaaatcccaatttggatgcataaattta |
41254943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 42 - 309
Target Start/End: Original strand, 15892895 - 15893162
Alignment:
| Q |
42 |
agaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggttcacaaacaagatc |
141 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||||||||||| |||||| |||||||| ||| ||| |
|
|
| T |
15892895 |
agaatgataagcaaagcattcgatcgacaaggcgggaccctcccctatgggagattgtcgactcccaggagcaagagacacagggttcacagtcaaaatc |
15892994 |
T |
|
| Q |
142 |
aagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaacaccggttaaattt |
241 |
Q |
| |
|
|| | |||||| ||| ||||||||| |||||||| ||||||| |||||| |||||||||||| ||||||||| ||||| |||| |||||| |||||| | |
|
|
| T |
15892995 |
aacatggacgattagaaagagtgcacggaaaagcaacatgtctcctacttctcctaagccaattccaaaaaatccgaagaagcaaacacctgttaaagtc |
15893094 |
T |
|
| Q |
242 |
aatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacc |
309 |
Q |
| |
|
| |||||||||||||||||||||| |||||| |||||| | |||||| ||||||||||||||||||| |
|
|
| T |
15893095 |
cacataccacacaaagaccaaatcccaatttgaatgcatgactttattcaaaaggttacagatgtacc |
15893162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 44712008 - 44712060
Alignment:
| Q |
245 |
ataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggt |
297 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| | |||||||||||||| |
|
|
| T |
44712008 |
ataccacacaaagaccaaattccaatttggatgcatgactttattgaaaaggt |
44712060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 41254785 - 41254743
Alignment:
| Q |
280 |
taaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
41254785 |
taaatttattgaaaaggttacagatgtacccggtgatggccat |
41254743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 28 - 322
Target Start/End: Original strand, 23255634 - 23255928
Alignment:
| Q |
28 |
caaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggt |
127 |
Q |
| |
|
|||| |||||| |||||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||||| ||||||| |||||| ||| |
|
|
| T |
23255634 |
caaaggagctcctaagaaagataagcaaagaattcgatcgacaaggcagtccctttcgctatgggagattgttgactcccaagagcaagagacacagggt |
23255733 |
T |
|
| Q |
128 |
tcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaa |
227 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23255734 |
tcacagacaagatcaacagggacgagtaggaagagtgcacgaaaaagcaacatgtcacctactcctcctaagccaactccaaaaaatccgaacaagccaa |
23255833 |
T |
|
| Q |
228 |
caccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacctgatgatgtccat |
322 |
Q |
| |
|
||||||||||| | || ||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
23255834 |
caccggttaaagtcaacataccgcacaaagaccaaatcccgatttggatgcctaaatttattgaaaaggttacagatgtacccggtgatggccat |
23255928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 25 - 309
Target Start/End: Original strand, 756838 - 757122
Alignment:
| Q |
25 |
catcaaaagagctcataagaaagataagcaaagcattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaa |
124 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| |||||||||||||||| |||| ||| |||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
756838 |
catcaaaggagctcctaagaaagataagcaaatcattcgatcgacaaggcggtcttcttcgctatgagagattgttgactcccaggagcaagagacacat |
756937 |
T |
|
| Q |
125 |
ggttcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagc |
224 |
Q |
| |
|
|||||||| |||| || || | |||||||||| ||||||||| ||||| | ||||||| ||||||||||||||||||||||||||||| || || | || |
|
|
| T |
756938 |
ggttcacatacaatattaacatggacgagtagaaagagtgcacagaaaaacaacatgtctcctactcctcctaagccaactccaaaaaatccaaagatgc |
757037 |
T |
|
| Q |
225 |
caacaccggttaaatttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacc |
309 |
Q |
| |
|
||||||| |||||| | | |||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |||| |
|
|
| T |
757038 |
caacacccgttaaagtcgacataccacacaaagaccaaatcccaatttggatgcatgactttattgaaaaggttacagatctacc |
757122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 58 - 298
Target Start/End: Original strand, 16667076 - 16667313
Alignment:
| Q |
58 |
cattcgatcgacaaggtggtcccctttgctatgggagattgttgactcccaggagcaagggacacaaggttcacaaacaagatcaagagggacgagtagg |
157 |
Q |
| |
|
|||||| ||||||| | | || |||| ||| | |||||||||| | || ||||| ||| |||||| | ||||||||||| ||| | | || ||||| |
|
|
| T |
16667076 |
cattcggtcgacaaagggatcgccttcgctctaggagattgtttattcacaggaacaacagacacatgcttcacaaacaaattcagcatgaacaagtaga |
16667175 |
T |
|
| Q |
158 |
aagagtgcatggaaaagcgacatgtcacctactcctcctaagccaactccaaaaaacccgaacaagccaacaccggttaaatttaatataccacacaaag |
257 |
Q |
| |
|
||||||||| |||||||| ||||||| |||| || ||||||||||| ||| ||||| || || ||||| ||||||||| | ||||||||||||||| |
|
|
| T |
16667176 |
aagagtgcacggaaaagcaacatgtctcctaatcttcctaagccaattccgaaaaatcctaa---gccaattccggttaaagtccatataccacacaaag |
16667272 |
T |
|
| Q |
258 |
accaaatcctaatttggatgcataaatttattgaaaaggtt |
298 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
16667273 |
accaaatcccacattggatgcatcaatttattgaaaaggtt |
16667313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 26674876 - 26674764
Alignment:
| Q |
91 |
ggagattgttgactcccaggagcaagggacacaaggttcacaaacaagatcaagagggacgagtaggaagagtgcatggaaaagcgacatgtcacctact |
190 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||| | ||||||||||| |||| |||||| ||||| || |||| | |||||||| ||||||| |||| | |
|
|
| T |
26674876 |
ggagattgttgactcctaggatcaacagacacatgcttcacaaacaaattcaatagggacaagtagaaaaagtgtacggaaaagcaacatgtctcctaat |
26674777 |
T |
|
| Q |
191 |
cctcctaagccaa |
203 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26674776 |
cctcctaagccaa |
26674764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 26674746 - 26674697
Alignment:
| Q |
245 |
ataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaa |
294 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||| ||||||||| |
|
|
| T |
26674746 |
ataccacacaaagaccaaatcctacattggatgcatgaatctattgaaaa |
26674697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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