View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5367_high_25 (Length: 333)
Name: NF5367_high_25
Description: NF5367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5367_high_25 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 27556942 - 27556630
Alignment:
| Q |
16 |
acatatttccaagttaaaactatcaatcaatatccgtgtctaatctcatataggcagctcggttagtgagctgagaaacactgaaagagttctaaccaag |
115 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27556942 |
acatatttccaagtaaaaactatcaat----atccgtgtctaatctcatataggaagctcggttagtgagctgagaaacactgaaagagttctaaccaag |
27556847 |
T |
|
| Q |
116 |
aggtcttagattcaaactccgaaaaactaacataaccactactttacttacaact-acattaaaaaa--tataatatcattagtgcttctgcattagtgg |
212 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27556846 |
aggtcttagattcaaactctgaaaatctaacataaccactactgtacttacaactaacattaaaaaaattataatatcattagtgcttctgcattagtgg |
27556747 |
T |
|
| Q |
213 |
tcagtgcaatgtgaccaaagagcataaagtaaacattgcaacataccctgaaaatggtgcagagtatcaagcttggatcctgtagacaatttccacatat |
312 |
Q |
| |
|
||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27556746 |
tcagtgcaacgtgacc----agcataaagtgaacattgcaacataccttgaaaatggtgcagagtatcaagcttggaccctgtagacaatttccacatat |
27556651 |
T |
|
| Q |
313 |
ataccacaccgtcacttgtgc |
333 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
27556650 |
ataccacaccgtcacttgtgc |
27556630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University