View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5367_high_26 (Length: 331)
Name: NF5367_high_26
Description: NF5367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5367_high_26 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 331
Target Start/End: Complemental strand, 9424156 - 9423831
Alignment:
| Q |
6 |
agcaccacagatcaagacaaagtcttaaagaaacccgacaaaattgttcaatgtccaagatgcaacagtttcgacacgaaattttgttatttcaataact |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9424156 |
agcagcacagatcaagacaaagtcttaaagaaacccgacaaaattgttcaatgtccaagatgcaacagtttcgacacgaaattttgttatttcaataact |
9424057 |
T |
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| Q |
106 |
ataatgtcagtcaacctcggcatttttgtcggaaatgtcatagatattggactgccggtggaacaatgagaaacgttcctttcggtgcagggagacggag |
205 |
Q |
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| T |
9424056 |
ataatgtcagtcaacctcggcatttttgtcggaaatgtcatagatattggactgccggtggaaaaatgagaaacgttcctttcggtgcagggagacggag |
9423957 |
T |
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| Q |
206 |
gaacaagcagatagcttctcaatatcgccacatgattgtagcttccggtggaatttcaacctccaattttgaaagcaacgattcttctaccgaatctgct |
305 |
Q |
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| T |
9423956 |
gaacaagcagatagcttctcaatatcgccacatgattgtagcttccggtggaatttcaacctcaaattttgaaagcaacgattcttctaccgaatctgct |
9423857 |
T |
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| Q |
306 |
gcggttttcaggtgctcaaataataa |
331 |
Q |
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| T |
9423856 |
gcggttttcaggtgctcaaataataa |
9423831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 9431487 - 9431233
Alignment:
| Q |
6 |
agcaccacagatcaagacaaagtcttaaagaaacccgacaaaattgttcaatgtccaagatgcaacagtttcgacacgaaattttgttatttcaataact |
105 |
Q |
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|||| ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
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| T |
9431487 |
agcagcacagatcaagacaaagtcctaaagaaaccagacaagattgttcaatgtccaagatgcaaaagtttcgacacaaaattttgttatttcaacaact |
9431388 |
T |
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| Q |
106 |
ataatgtcagtcaacctcggcatttttgtcggaaatgtcatagatattggactgccggtggaacaatgagaaacgttcctttcggtgcagggagacggag |
205 |
Q |
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| T |
9431387 |
acaatgtcaatcaacctcggcatttttgtcggagttgtcacagatattggaccaacggtggaacaatgagaaacgttgctgttggtgcagggagacggaa |
9431288 |
T |
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| Q |
206 |
gaacaagcagatagcttctcaatatcgccacatgattgtagcttccggtggaatt |
260 |
Q |
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| T |
9431287 |
gaacaaacacatagcttctcaatatcgtcatatgattgtagcgtccgatggaatt |
9431233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 33751940 - 33752157
Alignment:
| Q |
12 |
acagatcaagacaaagtcttaaagaaacccgacaaaattgttcaatgtccaagatgcaacagtttcgacacgaaattttgttatttcaataactataatg |
111 |
Q |
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||||||||||| ||| ||||||||||||| ||||| |||||||| ||||| |||||||||||| ||||| || |||||||||||||| |||||||||| |
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| T |
33751940 |
acagatcaagataaactcttaaagaaaccagacaagattgttcagtgtccgcgatgcaacagttgggacaccaagttttgttatttcaacaactataatg |
33752039 |
T |
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| Q |
112 |
tcagtcaacctcggcatttttgtcggaaatgtcatagatattggactgccggtggaacaatgagaaacgttcctttcggtgcagggagacggaggaacaa |
211 |
Q |
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||| ||||||||| ||||| || ||| || || || ||||||||||| ||||||||||||||||| ||||| | ||||| ||||| |||| ||| || |
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| T |
33752040 |
tcaatcaacctcgacatttctgcaagaactgccaaaggtattggactgctggtggaacaatgagaaatgttccgataggtgctgggaggcggaagaataa |
33752139 |
T |
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| Q |
212 |
gcagatagcttctcaata |
229 |
Q |
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||| |||| |||||||| |
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| T |
33752140 |
gcacctagcctctcaata |
33752157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 2823691 - 2823725
Alignment:
| Q |
147 |
agatattggactgccggtggaacaatgagaaacgt |
181 |
Q |
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| T |
2823691 |
agatattggactgccggtggaaccatgagaaacgt |
2823725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 31771759 - 31771911
Alignment:
| Q |
33 |
aagaaacccgacaaaattgttcaatgtccaagatgcaacagtttcgacacgaaattttgttatttcaataactataatgtcagtcaacctcggcattttt |
132 |
Q |
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| T |
31771759 |
aagaaacctgacaaaataattccatgcccgcgatgcaatagcatggacaccaaattttgttacttcaacaattacaatgtcaaccagcctcgtcattttt |
31771858 |
T |
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| Q |
133 |
gtcggaaatgtcatagatattggactgccggtggaacaatgagaaacgttcct |
185 |
Q |
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| T |
31771859 |
gtaagaaatgtcaaagatattggactgcaggaggaacaatgagaaatgttcct |
31771911 |
T |
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