View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5367_high_34 (Length: 312)

Name: NF5367_high_34
Description: NF5367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5367_high_34
NF5367_high_34
[»] chr4 (1 HSPs)
chr4 (28-312)||(25703204-25703488)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 28 - 312
Target Start/End: Original strand, 25703204 - 25703488
Alignment:
Q  28 ttttccatcttgatgaccggtgaagatgtttccttcggatataacaatggttttgaccaaaccactacttgatttaagaccggtataatctttaagttct 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25703204 ttttccatcttgatgaccggtgaagatgtttccttcggatataacaatggatttgaccaaaccactacttgatttaaaaccggtataatctttaagttct 25703303  T
Q  128 ttccacacccttatgtttttgctatcggtaccggtgtataacatgtcaccggaaacggctaaggagtagatgtgaccttcttcgcgagctagtgacccga 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25703304 ttccacacccttatgtttttgctatcggtaccggtgtataacatgtcaccggaaacggctaaggagtagatgtgaccttcttcgcgagctagtgacccga 25703403  T
Q  228 tgaggccattttccgggaaatagctgtcgttgtaattgttgtcgtggcggtggctgtggtggtattggaagaggttgattgcttc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25703404 tgaggccattttccgggaaatagctgtcgttgtaattgttgtcgtggcggtggctgtggtggtattggaagaggttgattgcttc 25703488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University