View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5367_high_39 (Length: 301)
Name: NF5367_high_39
Description: NF5367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5367_high_39 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 29404860 - 29405152
Alignment:
| Q |
9 |
tggacatcatcaattcccattccaacatcagacatccctatccaaaatccaaacagcaggagcttttcacaattcggtcgtcgcaattcagttcgagtcc |
108 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
29404860 |
tggacatcatcaattcccattccaacatccgacatccctatccaaaatccaaacagcagaagcttttcacaattcggtcgtcgcaactcagttcgagtcc |
29404959 |
T |
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| Q |
109 |
aaactcattacgactcagacatgtcaacacaccaagtagatgacctcgatccatcagatgaatccaatgctccagctagcaggccaaaattcactcgtgg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29404960 |
aaactcattacgactcagacatgtcaacacaccaagtagatgagctcgatccatcagatgaatccaatgctccagctagcaggccaaaattcactcgtgg |
29405059 |
T |
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| Q |
209 |
gagctcaactcggttcacggcagattcccctgagaattctggcggaggaaatctacgaccacaactatcacgcaagaattccaccaacgtgtc |
301 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29405060 |
gagctcaactcggttcacggcagattcctctgagaattctggcggaggaaatctacgaccacaactatcacgcaagaattccaccaacgtgtc |
29405152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 19911952 - 19911822
Alignment:
| Q |
9 |
tggacatcatcaattcccattccaacatcagacatccctatccaaaatccaaacagcaggagcttttcacaattcggtcgtcgcaattcagttcgagtcc |
108 |
Q |
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||||||||| | |||| |||||||| ||||| || |||||||||||||| || || || || ||||| ||||||||||||||||| ||||| ||| ||| |
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| T |
19911952 |
tggacatcaacgattcatattccaacttcagatattcctatccaaaatcctaatagtagaagtttttctcaattcggtcgtcgcaactcagtccgaatcc |
19911853 |
T |
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| Q |
109 |
aaactcattac---gactcagacatgtcaac |
136 |
Q |
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||||||| || ||||||||||||||||| |
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| T |
19911852 |
aaactcaccacgatgactcagacatgtcaac |
19911822 |
T |
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