View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5367_high_5 (Length: 402)
Name: NF5367_high_5
Description: NF5367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5367_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 30 - 357
Target Start/End: Complemental strand, 17487063 - 17486736
Alignment:
| Q |
30 |
gagttcaatatcaaaatcaatgctacaagttgtgtacatttgatcagaagtctttgtaaggaacataggctatatgacgcaacaaaaatattttcttacg |
129 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||||| |||||||| |||||||||| |||| |
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| T |
17487063 |
gagttcaatatcaaaatcaacgctacaagttgtgtacatttgatcagaggcctttgtaaggaacaaaggctacatgacgcagtaaaaatatttctttaca |
17486964 |
T |
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| Q |
130 |
gtcttgagaagggtttcatgttgaagccaatgatttgtaattacctcctcacgtgtcttctttcttcccgagcttgtaaggagtgtgctgttaatcttat |
229 |
Q |
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| T |
17486963 |
gtcttgagaagggtttcatgttgaagccaatgatttgtaatcacctcctcacgtgtcttctttattcccgagattataaggagtgtgttgttgatcttat |
17486864 |
T |
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| Q |
230 |
tggtgggatggaatctttgggatatcgtttaaattcagaagaatttgcaacgacattggcacttttacaccaatactgaaaaggaaagagaggaaaaata |
329 |
Q |
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|||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| | |||||||| |
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| T |
17486863 |
tggtaggatggaatcttttggataccgtttaaattcagaagaatttgcaacgacattggcacttttacaacaccaccaaaaaggaaagaaaagaaaaata |
17486764 |
T |
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| Q |
330 |
accctcagaaaagattaaattacactga |
357 |
Q |
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| T |
17486763 |
accatcagaaaagattaaattacactga |
17486736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 357
Target Start/End: Original strand, 6780015 - 6780342
Alignment:
| Q |
30 |
gagttcaatatcaaaatcaatgctacaagttgtgtacatttgatcagaagtctttgtaaggaacataggctatatgacgcaacaaaaatattttcttacg |
129 |
Q |
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| T |
6780015 |
gagttcaatatcaaaatcaacgctacaagttgtgtacatttgatcagaggcctttgtaaggaacagaggctacatgatgcagtaaaaatatttctttaca |
6780114 |
T |
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| Q |
130 |
gtcttgagaagggtttcatgttgaagccaatgatttgtaattacctcctcacgtgtcttctttcttcccgagcttgtaaggagtgtgctgttaatcttat |
229 |
Q |
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| T |
6780115 |
gtcttgagaagggtttcatgttgaagccaatgatttgtaatcacctcctcacgtgtcttctttattcccgagattataaggagtgtgctgttgatcttat |
6780214 |
T |
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| Q |
230 |
tggtgggatggaatctttgggatatcgtttaaattcagaagaatttgcaacgacattggcacttttacaccaatactgaaaaggaaagagaggaaaaata |
329 |
Q |
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|| | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| || | |||||||| |
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| T |
6780215 |
tgataggatggaatcttttggataccgtttaaattcagaagaatttgcaacgacattgacacttttacaccactaccaaaaaggaaggaaaagaaaaata |
6780314 |
T |
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| Q |
330 |
accctcagaaaagattaaattacactga |
357 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
6780315 |
accatcagaaaagattaaattacactga |
6780342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 103 - 357
Target Start/End: Original strand, 43099540 - 43099795
Alignment:
| Q |
103 |
atgacgcaacaaaaatattttcttacggtcttgagaagggtttcatgttgaagccaatgatttgtaattacctcctcacgtgtcttctttcttcccgagc |
202 |
Q |
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|||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43099540 |
atgacgcagtaaaaatattttcttaaaatcttgagaaggttttcatgttgaagccaatgatttgtaattacctcctcacgtgtcttctttcttcccgagc |
43099639 |
T |
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| Q |
203 |
ttgtaaggagtgtgctgttaatcttattggtgggatggaatctttgggatatcgtttaaattcagaagaatttgcaacgacattggcactttt-acacca |
301 |
Q |
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| T |
43099640 |
ttataaggagtgtgctgttgatcttattggtgggatggaatctttgggataccgtttaaattcagaagaatttgcaacgacattggcacttttaacacca |
43099739 |
T |
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| Q |
302 |
atactgaaaaggaaagagaggaaaaataaccctcagaaaagattaaattacactga |
357 |
Q |
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| T |
43099740 |
atactgaaaaggaaagagaggaaaaataacactcagaaaagattaaattacactga |
43099795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 43097492 - 43097556
Alignment:
| Q |
30 |
gagttcaatatcaaaatcaatgctacaagttgtgtacatttgatcagaagtctttgtaaggaaca |
94 |
Q |
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| T |
43097492 |
gagttcaatatcaaaatcaatgctacaagttgtgtacatttgatcagaagtctttgtaaggaaca |
43097556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 402
Target Start/End: Complemental strand, 9491757 - 9491729
Alignment:
| Q |
374 |
tagggttagggttagggttagggttaggg |
402 |
Q |
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| T |
9491757 |
tagggttagggttagggttagggttaggg |
9491729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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