View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5367_high_7 (Length: 385)

Name: NF5367_high_7
Description: NF5367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5367_high_7
NF5367_high_7
[»] chr3 (4 HSPs)
chr3 (32-361)||(37486991-37487316)
chr3 (99-189)||(3987016-3987108)
chr3 (144-189)||(11581460-11581505)
chr3 (100-180)||(22902776-22902857)
[»] chr7 (3 HSPs)
chr7 (115-189)||(36514428-36514502)
chr7 (118-189)||(1740791-1740862)
chr7 (105-189)||(19262654-19262738)
[»] chr8 (3 HSPs)
chr8 (99-181)||(30456441-30456525)
chr8 (120-189)||(34196064-34196133)
chr8 (115-167)||(25985506-25985558)
[»] chr6 (1 HSPs)
chr6 (99-189)||(33084027-33084119)
[»] chr5 (5 HSPs)
chr5 (98-167)||(3097143-3097212)
chr5 (99-188)||(11002645-11002734)
chr5 (115-189)||(31636141-31636215)
chr5 (99-189)||(33667187-33667277)
chr5 (105-150)||(32516533-32516578)
[»] chr2 (3 HSPs)
chr2 (100-189)||(23714482-23714570)
chr2 (100-189)||(24102154-24102242)
chr2 (99-189)||(9578924-9579014)
[»] chr1 (2 HSPs)
chr1 (99-167)||(39422285-39422354)
chr1 (118-191)||(26016427-26016500)
[»] chr4 (7 HSPs)
chr4 (118-181)||(35555876-35555939)
chr4 (118-189)||(54470197-54470268)
chr4 (99-178)||(10775654-10775735)
chr4 (98-181)||(17900448-17900533)
chr4 (99-189)||(36557251-36557342)
chr4 (139-187)||(42285923-42285971)
chr4 (115-191)||(42293468-42293544)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 32 - 361
Target Start/End: Complemental strand, 37487316 - 37486991
Alignment:
Q  32 aaaagttcagtccattgttttgaatgaagagcatcgttggtttctatcatgatgaaaattaaatttaaattaaaaatgacgatattagagagagtttgag 131  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| ||||||||||    |||||||||||||||||||||||||||    
T  37487316 aaaagttcagtccattgttttgaatgaagatcatcgttggtttctattacgatgaaaaataaatttaaa----aaatgacgatattagagagagtttgag 37487221  T
Q  132 taacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtagaaaatatggttccaccatccactcatactgtgaacaagggaaa 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37487220 taacacatatagtagaaaatatgttagaaactagacctatgtggtttgggcatgtagaaaatatggttccaccatccactcatactgtgaacaagggaaa 37487121  T
Q  232 ccagtgtatgccacaaaagagaccattggttttgattgctacttacnnnnnnnnnnnnnnnnnnnnnnctaacattgcatttgcaaagaaacggttatct 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||||| ||||||||||    
T  37487120 ccagtgtatgccacaaaagagaccattggttttgattgctacttacttttagtttttattttctttttctaacattgcatttgcaaagacacggttatct 37487021  T
Q  332 tgtaatgcggcgctactttaaaatgcatga 361  Q
    |||||||||| |||||||||||||||||||    
T  37487020 tgtaatgcggtgctactttaaaatgcatga 37486991  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 3987016 - 3987108
Alignment:
Q  99 aattaaaaatgacgatatt--agagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    ||||| |||||||||||||  |||||||||| | ||| ||| |||||||||||| ||| |||||||||||| || |||||||||| |||||||    
T  3987016 aattagaaatgacgatattggagagagagttggggtatcacctatagtagaaaagatggtagaaactagacttaggtggtttgggaatgtaga 3987108  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 11581460 - 11581505
Alignment:
Q  144 tagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    ||||||| ||| |||||||||||| || ||||||||||||||||||    
T  11581460 tagaaaagatggtagaaactagacttaggtggtttgggtatgtaga 11581505  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 22902776 - 22902857
Alignment:
Q  100 attaaaaatgacgatattagagagagtttgagtaacacatatagtag-aaaatatgttagaaactagacctatgtggtttgg 180  Q
    |||| ||||||  ||||||||||||||||||||| ||| |||||| | |||| ||| |||||||||||| || || ||||||    
T  22902776 attagaaatgaaaatattagagagagtttgagtagcacctatagtcgaaaaagatggtagaaactagacttaggttgtttgg 22902857  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 36514502 - 36514428
Alignment:
Q  115 attagagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    ||||||||||||| | ||| ||| |||||||||||| ||| |||||||||||| || |||||||||| |||||||    
T  36514502 attagagagagttggggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtaga 36514428  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 1740791 - 1740862
Alignment:
Q  118 agagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    |||||||||||| ||| ||  || ||||||||||||| | |||||||| | || ||||||||||||||||||    
T  1740791 agagagagtttgggtagcatctacagtagaaaatatggtggaaactaggcttaggtggtttgggtatgtaga 1740862  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 19262738 - 19262654
Alignment:
Q  105 aaatgacgatattagagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    ||||||| ||||||||||||||| | ||| ||| ||| |||||||| ||| |||||||| | | || |||||||| | |||||||    
T  19262738 aaatgacaatattagagagagttggggtagcacctattgtagaaaagatggtagaaacttggcttaggtggtttgagcatgtaga 19262654  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 30456525 - 30456441
Alignment:
Q  99 aattaaaaatgacgatattagagaga--gtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttggg 181  Q
    ||||| ||||||||| ||||||||||  ||| ||||  ||| |||||||||||| ||| |||||||||||| |||||||||||||    
T  30456525 aattagaaatgacgacattagagagatagttcgagttgcacctatagtagaaaagatggtagaaactagacttatgtggtttggg 30456441  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 34196064 - 34196133
Alignment:
Q  120 agagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    |||||||| | ||| ||| |||||||||||| |   |||||||||||| ||||||||||||| |||||||    
T  34196064 agagagttggggtagcacctatagtagaaaaaacagtagaaactagacttatgtggtttgggcatgtaga 34196133  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 25985506 - 25985558
Alignment:
Q  115 attagagagagtttgagtaacacatatagtagaaaatatgttagaaactagac 167  Q
    ||||||||||||| | ||| ||| |||||||||||| ||| ||||||||||||    
T  25985506 attagagagagttggggtagcacctatagtagaaaagatggtagaaactagac 25985558  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 33084027 - 33084119
Alignment:
Q  99 aattaaaaatgacgatattagagagag--tttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    ||||| |||||||||||||||||||||  || | ||| ||| ||| |||||||| ||| |||||||||||| || |||||||||| |||||||    
T  33084027 aattagaaatgacgatattagagagagagttggggtagcacctatggtagaaaagatggtagaaactagacttaggtggtttgggaatgtaga 33084119  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 3097143 - 3097212
Alignment:
Q  98 aaattaaaaatgacgatattagagagagtttgagtaacacatatagtagaaaatatgttagaaactagac 167  Q
    |||||||||||||||| |||| |||||||| | ||||||| |||| ||||||| ||| ||||||||||||    
T  3097143 aaattaaaaatgacgacattatagagagttggggtaacacctatattagaaaagatgctagaaactagac 3097212  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 11002734 - 11002645
Alignment:
Q  99 aattaaaaatgacgatattagagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtag 188  Q
    ||||| ||||||| | ||||||||||||| | ||| ||| || ||||||||| ||| |||||||||||| || |||||||||| ||||||    
T  11002734 aattagaaatgacaacattagagagagttcgggtagcacctacagtagaaaacatggtagaaactagacttaggtggtttgggcatgtag 11002645  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 31636215 - 31636141
Alignment:
Q  115 attagagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    |||||||| |||| | ||| ||| |||||||||||| ||| |||||||||||| || |||||||||| |||||||    
T  31636215 attagagaaagttggggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtaga 31636141  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 33667187 - 33667277
Alignment:
Q  99 aattaaaaatgacgatattagagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    ||||| ||||||| | ||||  ||||||| | ||| ||| |||||||||||| ||| |||||||||||| || |||||||||| |||||||    
T  33667187 aattagaaatgacaacattaacgagagttggggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtaga 33667277  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 32516533 - 32516578
Alignment:
Q  105 aaatgacgatattagagagagtttgagtaacacatatagtagaaaa 150  Q
    ||||||| | ||||||||||||| ||||||||| ||||||||||||    
T  32516533 aaatgacaacattagagagagttggagtaacacttatagtagaaaa 32516578  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 23714570 - 23714482
Alignment:
Q  100 attaaaaatgacgatattagagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    |||||||||||||| |||||| |||||| | ||| |||||||||||||||| ||| | |||||||||| ||||| |||| || |||||||    
T  23714570 attaaaaatgacgacattagatagagttgg-gtagcacatatagtagaaaagatggtggaaactagacttatgtagtttaggcatgtaga 23714482  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 24102242 - 24102154
Alignment:
Q  100 attaaaaatgacgatattagagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    |||||||||||||| |||||| |||||| | ||| |||||||||||||||| ||| | |||||||||| ||||| |||| || |||||||    
T  24102242 attaaaaatgacgacattagatagagttgg-gtagcacatatagtagaaaagatggtggaaactagacttatgtagtttaggcatgtaga 24102154  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 9579014 - 9578924
Alignment:
Q  99 aattaaaaatgacgatattagagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    ||||||||||||| || |||||||||||| | || ||||||||||||| ||| ||| |  ||| ||||| || |||||||||  |||||||    
T  9579014 aattaaaaatgacaatgttagagagagttggggtgacacatatagtagtaaagatgatgtaaaatagacttaggtggtttggacatgtaga 9578924  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 39422354 - 39422285
Alignment:
Q  99 aattaaaaatgacgatattaga-gagagtttgagtaacacatatagtagaaaatatgttagaaactagac 167  Q
    ||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| ||  ||||||||||||    
T  39422354 aattagaaatgacaatattagaagagagttggagtaacacatatagtagaaaagatagtagaaactagac 39422285  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 26016427 - 26016500
Alignment:
Q  118 agagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtagaaa 191  Q
    |||||||||| | ||||||| ||||  |||||| ||| |||||||||||  || ||||||||||||||||||||    
T  26016427 agagagagttggggtaacacctatatgagaaaagatggtagaaactagatttaggtggtttgggtatgtagaaa 26016500  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 35555939 - 35555876
Alignment:
Q  118 agagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttggg 181  Q
    |||||||||| | ||| ||| |||||||||||| ||| |||||||||||| || ||||||||||    
T  35555939 agagagagttcgggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttggg 35555876  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 54470197 - 54470268
Alignment:
Q  118 agagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    |||||||||| | ||| ||| |||||||||||| ||| | |||||||||| || |||||||||| |||||||    
T  54470197 agagagagttggggtagcacctatagtagaaaagatggtggaaactagacttaagtggtttgggcatgtaga 54470268  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 10775735 - 10775654
Alignment:
Q  99 aattaaaaatgacgatattagagagagttt--gagtaacacatatagtagaaaatatgttagaaactagacctatgtggttt 178  Q
    ||||| ||||||| | |||||||||||| |  | ||||||| |||||||||||| ||| |||||||||||| || |||||||    
T  10775735 aattagaaatgacaacattagagagagtgttggggtaacacctatagtagaaaagatggtagaaactagacataggtggttt 10775654  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 17900448 - 17900533
Alignment:
Q  98 aaattaaaaatgacgatattagaga--gagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttggg 181  Q
    |||||| ||||||||| ||||||||  ||||| | ||| ||| |||||||||||| | | ||||||||||||  ||||||||||||    
T  17900448 aaattagaaatgacgacattagagacggagttggggtagcacctatagtagaaaagacggtagaaactagactcatgtggtttggg 17900533  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 36557342 - 36557251
Alignment:
Q  99 aattaaaaatgacgatatt--agagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtaga 189  Q
    ||||| |||||||||||||  |||||||||| | | | |||  ||||||||||| ||| |||||||||||| || |||||||||| |||||||    
T  36557342 aattagaaatgacgatattggagagagagttggggcagcacccatagtagaaaagatggtagaaactagactta-gtggtttgggaatgtaga 36557251  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 42285971 - 42285923
Alignment:
Q  139 tatagtagaaaatatgttagaaactagacctatgtggtttgggtatgta 187  Q
    |||||||||||| ||| |||||||||||| || |||||||||| |||||    
T  42285971 tatagtagaaaagatggtagaaactagacttaggtggtttgggcatgta 42285923  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 42293544 - 42293468
Alignment:
Q  115 attagagagagtttgagtaacacatatagtagaaaatatgttagaaactagacctatgtggtttgggtatgtagaaa 191  Q
    ||||| ||||||| | ||| ||| |||||||||||| ||| | |||||| | | || ||||||||||||||||||||    
T  42293544 attagcgagagttggcgtagcacctatagtagaaaagatgatggaaactcggcttaggtggtttgggtatgtagaaa 42293468  T

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