View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5367_high_8 (Length: 384)
Name: NF5367_high_8
Description: NF5367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5367_high_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 26449249 - 26449632
Alignment:
| Q |
1 |
tgagcagcaccacagagattgcaaatggatgtagtatgaaagcctctaagagagaggttatcatctgtaggaagcttgttatgcaacagtctccaaacaa |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449249 |
tgagcagcactacagagattgcaaatggatgtagtatgacagcctctaagagagaggttatcatctgtaggaagcttgttatgcaacagtctccaaacaa |
26449348 |
T |
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| Q |
101 |
gcacggacttagaaggagggatagcaatgtgccaaatgactttggcccaactgatgttctgaggctgattggaagtcaggaagagatatgcgtctttaaa |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449349 |
gcaaggacttagaaggagggatagcaatgtgccaaatgactttggcccaactgatgttctgaggctgattggaagtcaggaagagatatgcgtctttaaa |
26449448 |
T |
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| Q |
201 |
agctagatttccatcatgagaggctttctatattagtttatcttctttagggaaaataggtatagtagtcaacaatagtttctgctgcaaagcaggatat |
300 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||| |||| |
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| T |
26449449 |
agctaaatttccatcatgagaggctttccatattagtttatcttctttagggacaataggtatagtagtcatcaatagtttttgctccaaagcagaatat |
26449548 |
T |
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| Q |
301 |
gcaggcaaagaagcttgaggaacattccaatttgaatctttgatgtaggtatccacattagattgcagaagatgatgtaaattc |
384 |
Q |
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||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449549 |
gcaaccaaaaaagcttgaggaacattccaatttgaatctttgatgtaggtatccacattagattgcagaagatgatgtaaattc |
26449632 |
T |
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