View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368-Insertion-4 (Length: 195)
Name: NF5368-Insertion-4
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368-Insertion-4 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 7e-51; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 1176755 - 1176566
Alignment:
| Q |
6 |
cagttttatcccatcaagaagtnnnnnnnttcttagaaaccatatacaaccacaatgcaataaagaaggcacagtacagtannnnnnnagtgatgatagg |
105 |
Q |
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| T |
1176755 |
cagttttatcccatcaagaagtaaaaaaattcttagaaaccatatacaaccacaatgcaataaagaaggcacagttatgtatttttttagtgatgatagg |
1176656 |
T |
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| Q |
106 |
taaacacccataggtggcataccactcctctaccatccttatgtggcannnnnnnnnnaatttcagacctcttctctcctcaaacccctc |
195 |
Q |
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| T |
1176655 |
taaacacccataggtggcataccactcctctaccacccttatgtggcattttttttttaatttcagacctcttctctcctcaaacccctc |
1176566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 1237526 - 1237576
Alignment:
| Q |
35 |
ttcttagaaaccatatacaaccacaatgcaataaagaaggcacagtacagt |
85 |
Q |
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| T |
1237526 |
ttcttagaaaccatatacatccacaatgcaataaagaaggcgcagtacagt |
1237576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 1182279 - 1182232
Alignment:
| Q |
35 |
ttcttagaaaccatatacaaccacaatgcaataaagaaggcacagtac |
82 |
Q |
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| T |
1182279 |
ttcttagaaaccatatacatccacaatacaataaagaaggcacagtac |
1182232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 897058 - 897015
Alignment:
| Q |
35 |
ttcttagaaaccatatacaaccacaatgcaataaagaaggcaca |
78 |
Q |
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| T |
897058 |
ttctaagaaaccatatacatccacaatgcaacaaagaaggcaca |
897015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 793927 - 793956
Alignment:
| Q |
35 |
ttcttagaaaccatatacaaccacaatgca |
64 |
Q |
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| T |
793927 |
ttcttagaaaccatatacaaccacaatgca |
793956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 8004854 - 8004795
Alignment:
| Q |
94 |
agtgatgataggtaaacacccataggtggcataccactcctctaccatccttatgtggca |
153 |
Q |
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| T |
8004854 |
agtgatgataggtaaacacccataggtggcataccactcctctaccacccttatgtggca |
8004795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 194
Target Start/End: Complemental strand, 8004779 - 8004749
Alignment:
| Q |
164 |
aatttcagacctcttctctcctcaaacccct |
194 |
Q |
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| T |
8004779 |
aatttcagacctcttctctcctcaaacccct |
8004749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 7e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 5197648 - 5197592
Alignment:
| Q |
94 |
agtgatgataggtaaacacccataggtggcataccactcctctaccatccttatgtg |
150 |
Q |
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| T |
5197648 |
agtgatgataggtaaacactcataggtggcataccactcctttaccacccttatgtg |
5197592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 5197572 - 5197541
Alignment:
| Q |
164 |
aatttcagacctcttctctcctcaaacccctc |
195 |
Q |
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| T |
5197572 |
aatttcagacctcttctctcctcaaacccctc |
5197541 |
T |
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