View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368-Insertion-5 (Length: 133)
Name: NF5368-Insertion-5
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368-Insertion-5 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 10593499 - 10593624
Alignment:
| Q |
8 |
atatcgattccacctggaatcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtgtctcagtgtaatttttctgatctt |
107 |
Q |
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| T |
10593499 |
atatcgattccacctggaatcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtgtctcagtgtaatttttttgatctt |
10593598 |
T |
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| Q |
108 |
tgaaggcattgtgggtctagctgtta |
133 |
Q |
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| T |
10593599 |
ttaaggcattgtgggtctagctgtta |
10593624 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 32119075 - 32118988
Alignment:
| Q |
26 |
atcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtgtctc---agtgtaatttttctgatctttga |
110 |
Q |
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| T |
32119075 |
atcatatatcaatcaaaatttactctgcttgtgtattgagaagttaggcataattgtctctccttagtgtcatttttctgatttttga |
32118988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 14376914 - 14376958
Alignment:
| Q |
89 |
gtgtaatttttctgatctttgaaggcattgtgggtctagctgtta |
133 |
Q |
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| T |
14376914 |
gtgtcatttttctgatttttgaaggcattgctggtctagctgtta |
14376958 |
T |
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