View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_high_1 (Length: 474)
Name: NF5368_high_1
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 3 - 457
Target Start/End: Complemental strand, 28048664 - 28048210
Alignment:
| Q |
3 |
gatgtcgaagaatattgaaggagaatatcgaaatccctgatttattataattttgcatgcaacttatagattatagatgaaagaaagtcataaaaatata |
102 |
Q |
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| T |
28048664 |
gatgtagaaaaatattgaaggagaatatcgaaatccctgatttattataattttgcatgcaacttatagattatagatgaaagaaagtcataaaaatata |
28048565 |
T |
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| Q |
103 |
taaaagtacaatgttgaagacatgagaatgttcggatggtttatggtggtgactaacttttagagataaattgaaaagagctttagacatgtcataagct |
202 |
Q |
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| T |
28048564 |
taaaagtacaatgttgaagacatgagaatgttcggatggtttatggtggtgactaacttttagagataaattgaaaagagctttagacatgtcataagct |
28048465 |
T |
|
| Q |
203 |
attttagtaatcttttcttaaacacagtctcacaattgtgtatatcgttcgcataatgggataggaatataattggtttagaatagaattagttcctcct |
302 |
Q |
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| T |
28048464 |
atttttgtaatcttttcttaaacacagtctcacaattgtgtatatcgttcgcataatgggataggaatataattggtttagaatagaattagttcctcct |
28048365 |
T |
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| Q |
303 |
tcagttaatttaggttgcatttgattctcttttcattctatgtttgacatcacagtggaatgcaatcagaattgtgactaaatgacataaattcctttaa |
402 |
Q |
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| T |
28048364 |
tcagttaatttaggttgcatttgattctcttttcattctatgtttgacatcacagtggaatgcaatcagaattgtgactaaatgacataaattcctttaa |
28048265 |
T |
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| Q |
403 |
ttgagaaaaatttaagaaattaggtattgcatttatcggtttggataagctattt |
457 |
Q |
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| T |
28048264 |
ttgagaaaaatttaagaaattaggtattgcatttatcggtttggataagctattt |
28048210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 363 - 450
Target Start/End: Complemental strand, 27923922 - 27923835
Alignment:
| Q |
363 |
tgcaatcagaattgtgactaaatgacataaattcctttaattgagaaaaatttaagaaattaggtattgcatttatcggtttggataa |
450 |
Q |
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| T |
27923922 |
tgcaatcaggattgtgactaaatgacataaattcctttaattgtgaaaaacttaagaaattagttattgcatttacctgtttggataa |
27923835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 381 - 450
Target Start/End: Complemental strand, 28004838 - 28004769
Alignment:
| Q |
381 |
taaatgacataaattcctttaattgagaaaaatttaagaaattaggtattgcatttatcggtttggataa |
450 |
Q |
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| T |
28004838 |
taaatgacataaattcctttaattgagaaaaacttaagaaattaggtattgcatttacctgtttggataa |
28004769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 395
Target Start/End: Complemental strand, 28077734 - 28077594
Alignment:
| Q |
254 |
cataatgggataggaatataattggtttagaatagaat--tagttcctccttcagttaatttaggttgcatttgattctcttttcattctatgtttgaca |
351 |
Q |
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| T |
28077734 |
cataatgggatcagagtataattagtttagaatagaatgatagttcctccttcagtt---ttaggttgcacctgcttctgttttcatttaatgttttcaa |
28077638 |
T |
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| Q |
352 |
tcacagtggaatgcaatcagaattgtgactaaatgacataaatt |
395 |
Q |
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| T |
28077637 |
tcacattggaatgtaatcaggattgtgactaaacaacataaatt |
28077594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 28037005 - 28036912
Alignment:
| Q |
254 |
cataatgggat-aggaatataattggtttagaatagaat--tagttcctccttcagttaatttaggttgcatttgattctcttttcattctatgttt |
347 |
Q |
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| T |
28037005 |
cataatgggattaggagtataattgttttagaatagaatgatagttcctccttcagtt---ttaggttacacttgcttctattttcattctatgttt |
28036912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 28037371 - 28037306
Alignment:
| Q |
152 |
tgactaacttttagagataaattgaaaagagcttta----gacatgtcataagctattttagtaat |
213 |
Q |
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| T |
28037371 |
tgactaacttttagagataaattaaaaacagctttagacagacatgtcataacctatttttgtaat |
28037306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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