View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_high_12 (Length: 304)
Name: NF5368_high_12
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 43 - 289
Target Start/End: Original strand, 47108560 - 47108808
Alignment:
| Q |
43 |
caacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaaacattccaaacacaatattataaaaggatt |
142 |
Q |
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| T |
47108560 |
caacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacaaatgcaaacattccaaacacaatattataaaaggatt |
47108659 |
T |
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| Q |
143 |
attttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatcttttgaaagaaggtcctagagtgagattgtaacacttatcagaatca |
242 |
Q |
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| T |
47108660 |
attttgctttgtaacttacaccgtagagtgcagtatttgttagaggattcatc-tttgaaagaaggtcctagagtgagattgtaacacttatcagaatca |
47108758 |
T |
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| Q |
243 |
ggatccgccttgag---ttctttaaatttgtgtgtaactatggaagaaaa |
289 |
Q |
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| T |
47108759 |
ggatccgccttgagttcttctttagatttgtgtgtcactatggaagaaaa |
47108808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 44 - 286
Target Start/End: Original strand, 48935779 - 48936020
Alignment:
| Q |
44 |
aacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaaacattccaaacacaatattataaaaggatta |
143 |
Q |
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| T |
48935779 |
aacaatatatttatttcaaatcaagcatgaattttcatgttgataggaacaattaggaaacaaatgaaaacattccaaacacaatattataaaaggatta |
48935878 |
T |
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| Q |
144 |
ttttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatcttttgaaagaaggtcctagagtgagattgtaacacttatcagaatcag |
243 |
Q |
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| T |
48935879 |
ttttgctttgtaacttacaccgtagagtgcagtatttgttataggattcatc-tttgaaagaaggtcctagagtgagattgtaacactcatcagaatcag |
48935977 |
T |
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| Q |
244 |
gatccgccttgagttctttaaatttgtgtgtaactatggaaga |
286 |
Q |
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| T |
48935978 |
gatccgccttgagttctttagatttgtgtgtcactatggaaga |
48936020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 36969901 - 36969638
Alignment:
| Q |
13 |
aatatattagagaagccaaattnnnnnnnncaacaatatatttatttcaaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaa |
112 |
Q |
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| T |
36969901 |
aatatattatagaagccaaattaaaaaaagcaacaatatatttatgtccaatcaagcgtgaattttcatgttgataggaacaattaggaaacgaatgcaa |
36969802 |
T |
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| Q |
113 |
acattccaaacacaatattataaaaggattattttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatcttttgaaagaaggtcct |
212 |
Q |
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| T |
36969801 |
acattccaaacacaatattataaaaggattattttgctttgtgacttacaccgtagagtgcagtatttgttagaggattcatc-tttgaaagaaggttct |
36969703 |
T |
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| Q |
213 |
agagtgagattgtaacacttatcagaatcaggatccgccttgagttctttaaatttgtgtgtaactatggaagaaaa |
289 |
Q |
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| T |
36969702 |
agagtgagattgtaacactt------------atccgccttgagttctttaaatttgtgtgtaactattgaagaaaa |
36969638 |
T |
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