View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_high_19 (Length: 251)
Name: NF5368_high_19
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_high_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 3668691 - 3668920
Alignment:
| Q |
27 |
ctatattttttaatattattattttgagcgag-----ttgattgcatttcattaacgataatatgttggatacgagttataatatctataaaatatgaat |
121 |
Q |
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| T |
3668691 |
ctatattttttaatattattattttgagcaagacatgtttattgcatttcattaacgataatatgttggacacgagttataatatctataaaatgtaaat |
3668790 |
T |
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| Q |
122 |
ccaagttaaaaatgtatccattattgcaagaacatgaaccgttctattgacttgtcttctaataaattgacgtgcgagataaacttaaatgctactatat |
221 |
Q |
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| T |
3668791 |
ctgaattaaaaatgtgtccattattacaagaacatgaaccgttctattgacttgtcttctaataaattgacatgcgagataaacttaaatgctacaatat |
3668890 |
T |
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| Q |
222 |
aatataaagatattataagatattttctaa |
251 |
Q |
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| T |
3668891 |
gatataaagatattataagatattttctaa |
3668920 |
T |
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