View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5368_high_3 (Length: 422)

Name: NF5368_high_3
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5368_high_3
NF5368_high_3
[»] scaffold1457 (1 HSPs)
scaffold1457 (53-409)||(287-640)
[»] scaffold0263 (1 HSPs)
scaffold0263 (46-175)||(14830-14959)
[»] scaffold0002 (4 HSPs)
scaffold0002 (46-175)||(93000-93129)
scaffold0002 (1-51)||(112529-112579)
scaffold0002 (14-51)||(116139-116176)
scaffold0002 (342-370)||(92808-92836)
[»] scaffold0351 (1 HSPs)
scaffold0351 (6-51)||(9018-9063)
[»] chr3 (5 HSPs)
chr3 (1-51)||(13699649-13699699)
chr3 (1-46)||(12409661-12409706)
chr3 (6-51)||(13654256-13654301)
chr3 (6-51)||(16304970-16305015)
chr3 (15-51)||(19657798-19657834)
[»] chr4 (1 HSPs)
chr4 (6-51)||(14902210-14902255)
[»] chr1 (1 HSPs)
chr1 (10-51)||(21682924-21682965)
[»] chr7 (1 HSPs)
chr7 (15-51)||(1878040-1878076)


Alignment Details
Target: scaffold1457 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold1457
Description:

Target: scaffold1457; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 53 - 409
Target Start/End: Original strand, 287 - 640
Alignment:
Q  53 gtaggtatcgatgtggtgtccattgctccatcctatgaaactgataaatactacaacctactctactcggcacaccctgacgatattaattgggttaact 152  Q
    ||||||||||||||||| ||||||||||||||| ||| || ||| || |||||||| |||||||||||||||||| |||||||||||||||||||| |||    
T  287 gtaggtatcgatgtggtatccattgctccatcccatgcaaatgacaattactacaagctactctactcggcacacgctgacgatattaattgggttgact 386  T
Q  153 tccaattctacaggcagcctatcaccttcaccacagaggctgaaatttttgaactcttttgtagtctctcagagaaatacgatcctaaaaaatccttggc 252  Q
     ||||||||||| ||||||||      || ||||||||  |||  ||||    ||||||  ||||||| ||  | |||||| || | |||||  | | |     
T  387 accaattctacatgcagccta------tccccacagagaatgagtttttaagcctctttcttagtctcgcaagggaatacgctcttgaaaaactcctagt 480  T
Q  253 aggagcaagcaccgatccacgtgacgccggtaatgtttcactagatgtct---ttaggatattcatcgatcttgtcaagcgtaaaaacctcagtggcatt 349  Q
    |||||||||||||||||| |||||||  ||||||||| ||||||||||||   ||  ||  | || | ||||  | |||| ||||   ||||||||||||    
T  481 aggagcaagcaccgatcctcgtgacggaggtaatgttccactagatgtcttcgttcagacttgcaccaatctgattaagcataaatcactcagtggcatt 580  T
Q  350 ttcatttggaatgctaatgaccttgagaaaattgcactagctatgctcagtaataattaa 409  Q
    |||||||||||||||||||||  ||||||||||||||| | ||| |||| ||||||||||    
T  581 ttcatttggaatgctaatgactatgagaaaattgcactggatatcctcactaataattaa 640  T

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Target: scaffold0263 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 14959 - 14830
Alignment:
Q  46 gaaagaggtaggtatcgatgtggtgtccattgctccatcctatgaaactgataaatactacaacctactctactcggcacaccctgacgatattaattgg 145  Q
    |||||||||| |||||||||||||||| |||||||||||| |||||||| ||||| |||||||   |||||||| ||||  | |||||||||||||||||    
T  14959 gaaagaggtacgtatcgatgtggtgtctattgctccatcccatgaaactcataaacactacaaggaactctacttggcatgcactgacgatattaattgg 14860  T
Q  146 gttaacttccaattctacaggcagcctatc 175  Q
    ||||||| ||||||||||| ||||||||||    
T  14859 gttaactaccaattctacatgcagcctatc 14830  T

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Target: scaffold0002 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 93129 - 93000
Alignment:
Q  46 gaaagaggtaggtatcgatgtggtgtccattgctccatcctatgaaactgataaatactacaacctactctactcggcacaccctgacgatattaattgg 145  Q
    |||||||||| |||||||||||||||| |||||||||||| |||||||| ||||| |||||||   |||||||| ||||  | |||||||||||||||||    
T  93129 gaaagaggtacgtatcgatgtggtgtctattgctccatcccatgaaactcataaacactacaaggaactctacttggcatgcactgacgatattaattgg 93030  T
Q  146 gttaacttccaattctacaggcagcctatc 175  Q
    ||||||| ||||||||||| ||||||||||    
T  93029 gttaactaccaattctacatgcagcctatc 93000  T

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Target: scaffold0002; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 112579 - 112529
Alignment:
Q  1 atcacagacaaaattttataagtcttaaatcaaaatattggttctgaaaga 51  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  112579 atcatagacaaaattttataagtcttaaatcaaaatattggttctgaaaga 112529  T

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Target: scaffold0002; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 116176 - 116139
Alignment:
Q  14 ttttataagtcttaaatcaaaatattggttctgaaaga 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  116176 ttttataagtcttaaatcaaaatattggttctgaaaga 116139  T

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Target: scaffold0002; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 370
Target Start/End: Complemental strand, 92836 - 92808
Alignment:
Q  342 gtggcattttcatttggaatgctaatgac 370  Q
    |||||||||||||||||||||||||||||    
T  92836 gtggcattttcatttggaatgctaatgac 92808  T

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Target: scaffold0351 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 9018 - 9063
Alignment:
Q  6 agacaaaattttataagtcttaaatcaaaatattggttctgaaaga 51  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  9018 agacaaaattttataagtcttaaatcaaagtattggttctgaaaga 9063  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13699699 - 13699649
Alignment:
Q  1 atcacagacaaaattttataagtcttaaatcaaaatattggttctgaaaga 51  Q
    |||| |||||||| |||||||||||||||||||| ||||||||||||||||    
T  13699699 atcatagacaaaaatttataagtcttaaatcaaagtattggttctgaaaga 13699649  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12409661 - 12409706
Alignment:
Q  1 atcacagacaaaattttataagtcttaaatcaaaatattggttctg 46  Q
    |||| |||| ||| ||||||||||||||||||| ||||||||||||    
T  12409661 atcatagactaaaatttataagtcttaaatcaagatattggttctg 12409706  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 13654301 - 13654256
Alignment:
Q  6 agacaaaattttataagtcttaaatcaaaatattggttctgaaaga 51  Q
    |||||||| ||||||||||||||||| || ||||| ||||||||||    
T  13654301 agacaaaaatttataagtcttaaatccaagtattgattctgaaaga 13654256  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 16304970 - 16305015
Alignment:
Q  6 agacaaaattttataagtcttaaatcaaaatattggttctgaaaga 51  Q
    |||| ||||||||||||||||||| |||| ||||||||||| ||||    
T  16304970 agactaaattttataagtcttaaaacaaagtattggttctggaaga 16305015  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 19657798 - 19657834
Alignment:
Q  15 tttataagtcttaaatcaaaatattggttctgaaaga 51  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  19657798 tttataagtcttaaagcaaagtattggttctgaaaga 19657834  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 14902210 - 14902255
Alignment:
Q  6 agacaaaattttataagtcttaaatcaaaatattggttctgaaaga 51  Q
    |||||||| ||||||||||||||||  || ||||||||||||||||    
T  14902210 agacaaaaatttataagtcttaaattcaagtattggttctgaaaga 14902255  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 21682924 - 21682965
Alignment:
Q  10 aaaattttataagtcttaaatcaaaatattggttctgaaaga 51  Q
    |||||||||| ||||||||| |||| ||||||||||||||||    
T  21682924 aaaattttattagtcttaaaacaaagtattggttctgaaaga 21682965  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 1878040 - 1878076
Alignment:
Q  15 tttataagtcttaaatcaaaatattggttctgaaaga 51  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  1878040 tttataagtcttaaaacaaagtattggttctgaaaga 1878076  T

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