View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_high_5 (Length: 389)
Name: NF5368_high_5
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_high_5 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 6497284 - 6496923
Alignment:
| Q |
19 |
cccacgttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggctt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6497284 |
cccacgttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcta |
6497185 |
T |
|
| Q |
119 |
ctgttgtagtgatgcttaatagtgattcagttactctcccaatgcctttggaacctgcatttcatatggatagcagaaaccttcaagatatgaaatcatg |
218 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6497184 |
ctgtagtagtgatgctaaatagtgattcagttactctcccaatgcctttggaacctgcatttcatatggatagcagaaaccttcaagatatgaaatcatg |
6497085 |
T |
|
| Q |
219 |
gggtcatagttcagctcaagaatcagtcaatgggtcttcaaatacagagctgtatcctcggtagttgttggattaatttcagtcatattcatgtaa-ata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6497084 |
gggtcatagttcagctcaagaatcagtcaatgggtcttcaaatacagagctgtatcctcggtagttgttggattaatttcagtcatattcatgtaatata |
6496985 |
T |
|
| Q |
318 |
catgagcatgtttcatcttcatgtatgtaacacataaagatatagtcatcaattgagtatta |
379 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496984 |
catgagcatgtttcatcttcatgtatgtaacacataaagatatagtcatcaattgagtatta |
6496923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 6510264 - 6510100
Alignment:
| Q |
25 |
ttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttg |
124 |
Q |
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|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510264 |
ttaaacaatgattcacgaaatgaaatttttagatgtattcatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttg |
6510165 |
T |
|
| Q |
125 |
tagtgatgcttaatagtgattcagttactctcccaatgcctttggaacctgcatttcatatggat |
189 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510164 |
tagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggat |
6510100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 6514628 - 6514384
Alignment:
| Q |
25 |
ttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttg |
124 |
Q |
| |
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||||||||||| |||| |||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
6514628 |
ttaaacaatgactcactaaatgagataatgagatgtatccatattggattactttgtgttcaagagaatgtagctagcagaccaaccatggcttctgttg |
6514529 |
T |
|
| Q |
125 |
tagtgatgcttaatagtgattcagttactctcccaatgcctttggaacctgcatttcatatggatagcagaaaccttcaagatatgaaatcatggggtca |
224 |
Q |
| |
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|||||| ||||||||| ||| |||||||||||||| |||||| |||||||||||||||| | | ||||||||||||||| | ||||| |
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| T |
6514528 |
tagtgacgcttaatagcccttctgttactctcccaattcctttgcaacctgcatttcatat---------agggcctcaagatatgaaatcgtcaggtca |
6514438 |
T |
|
| Q |
225 |
tagttcagctcaagaatcagtcaatgggtcttcaaatacagagctgtatcctcg |
278 |
Q |
| |
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|||||| ||||||||||||||||||||| ||||||||||| |||| | |||||| |
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| T |
6514437 |
tagttctgctcaagaatcagtcaatggggcttcaaatacacagctatttcctcg |
6514384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 6502610 - 6502468
Alignment:
| Q |
25 |
ttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttg |
124 |
Q |
| |
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|||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| ||| | || |||| |||||||||| ||| |
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| T |
6502610 |
ttaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatatagtaaatagaccaaccatggcttctattg |
6502511 |
T |
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| Q |
125 |
tagtgatgcttaatagtgattcagttactctcccaatgccttt |
167 |
Q |
| |
|
|||||||||||||||| || || |||||||| ||||||||||| |
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| T |
6502510 |
tagtgatgcttaatagcgactctgttactcttccaatgccttt |
6502468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 6525874 - 6526001
Alignment:
| Q |
19 |
cccacgttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggctt |
118 |
Q |
| |
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||||| ||||||||||||||| || ||||| ||||||| || || ||||| ||||||||||||||||| |||| |||||||||||||| ||||||| |
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| T |
6525874 |
cccacattaaacaatgattcagtgaacgaaataatgagatgcatccacattgggttactttgtgttcaagaaaatgcagctagcaggccaactatggctt |
6525973 |
T |
|
| Q |
119 |
ctgttgtagtgatgcttaatagtgattc |
146 |
Q |
| |
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|| ||||| | |||||||||||| |||| |
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| T |
6525974 |
ctattgtactaatgcttaatagtcattc |
6526001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 47771526 - 47771647
Alignment:
| Q |
25 |
ttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttg |
124 |
Q |
| |
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||||||||| |||| ||||||||| ||||||| || |||||||| ||||||||||||||||| ||||||| | ||| |||| ||||||| |||||| |
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| T |
47771526 |
ttaaacaatatttcagcaaatgaaataatgagatgcatccatattggcttactttgtgttcaagaaaatgtagttgacagaccaaccatggctactgttg |
47771625 |
T |
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| Q |
125 |
tagtgatgcttaatagtgattc |
146 |
Q |
| |
|
| | |||||||||||| |||| |
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| T |
47771626 |
cactcatgcttaatagttattc |
47771647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 47775678 - 47775799
Alignment:
| Q |
25 |
ttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttg |
124 |
Q |
| |
|
||||||||| |||| ||||||||| |||||||||| ||||||| ||||||||||||||||| ||||||| | ||| |||| ||||||| |||||| |
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| T |
47775678 |
ttaaacaatatttcagcaaatgaaataatgagatgtatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgttg |
47775777 |
T |
|
| Q |
125 |
tagtgatgcttaatagtgattc |
146 |
Q |
| |
|
| | |||||||||||| |||| |
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| T |
47775778 |
cactcatgcttaatagttattc |
47775799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 4288 - 4124
Alignment:
| Q |
25 |
ttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttg |
124 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4288 |
ttaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttg |
4189 |
T |
|
| Q |
125 |
tagtgatgcttaatagtgattcagttactctcccaatgcctttggaacctgcatttcatatggat |
189 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4188 |
tagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggat |
4124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 11944 - 11780
Alignment:
| Q |
25 |
ttaaacaatgattcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttg |
124 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11944 |
ttaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttg |
11845 |
T |
|
| Q |
125 |
tagtgatgcttaatagtgattcagttactctcccaatgcctttggaacctgcatttcatatggat |
189 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11844 |
tagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggat |
11780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 28843869 - 28843804
Alignment:
| Q |
36 |
ttcacgaaatgaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctag |
101 |
Q |
| |
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|||| |||||||||| ||||||| || |||||||| ||||||||||| ||||| ||||||||||| |
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| T |
28843869 |
ttcaagaaatgaaatcatgagatgcattcatattgggttactttgtgtgcaagacaatgtagctag |
28843804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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