View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5368_high_6 (Length: 373)
Name: NF5368_high_6
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 362
Target Start/End: Original strand, 22553539 - 22553887
Alignment:
| Q |
14 |
caagaggaacatagtccataattcaaaaatcctggtagaggaaacaaatgaaattgcagcatgatggattgaagtcatacctttcgaaaggttttcttcc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22553539 |
caagaggaacatagtccataattcaaaaatcctggtagaggaaacaaatgaaattgcagcatgatggattgaagtcatacctttcaaaaggttttcttcc |
22553638 |
T |
|
| Q |
114 |
tgacaacagctccaaaagcagcaccccaaaggcaaagacgtcgctctttgtgcagcaagctcccagttggccatgctcaggtgaatcatacccagaatct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22553639 |
tgacaacagctccaaaagcagcaccccaaaggcaaagacgtcgctctttgtgcagcaagctcccagttggccatgctcaggtgaatcatacccagaatct |
22553738 |
T |
|
| Q |
214 |
ctaatagcaatctcagaagcctatttataacagaccataagtcaatgaacctatctctattgtatagcaagattattattataaccgttatgattcactt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22553739 |
ctaatagcaatctcagaagcctatttataacagaccataagtcaatgaacctatctctattgtatagcaagattattattataaccgttatgattcactt |
22553838 |
T |
|
| Q |
314 |
tgcaactgttaatttataatttgtcattagtctaggtacttatattctt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22553839 |
tgcaactgttaatttataatttgtcattagtctaggtacttatattctt |
22553887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University