View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_11 (Length: 330)
Name: NF5368_low_11
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 318
Target Start/End: Original strand, 21582873 - 21583169
Alignment:
| Q |
22 |
gacgtgtggttgtgtttccacgttgacgtagacggttcattcacccttggacttggtaatcaactttggtacttactagtaactactagtaataattgaa |
121 |
Q |
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| T |
21582873 |
gacgtgtggttgtgtttccacgttgacgtagacggttcattcacccttggacttggtaatcaactttggtacttactagtaactactagtaataattgaa |
21582972 |
T |
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| Q |
122 |
caacaacaagggtatggttcaacaacttaattgaaatagtatttcattagaacagttagttataacgagacagagagtggtaatcatcaatggattttgt |
221 |
Q |
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| T |
21582973 |
caacaacaagggtatggttcaacaactgaattgaaatagtatttcattagaacagttagttataacgagacagagagtggtaatcatcaatggattttgt |
21583072 |
T |
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| Q |
222 |
tcaacaactgacttcccttgactggcaacaagaatcctaccctgcctttcatgatttcttcattatacctatcttcactctcttcttcccttccctt |
318 |
Q |
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| T |
21583073 |
tcaacaactgacttcccttgactggcaacaagaatcctaccctgcctttcatgatttcttcattatacctatcttcactctcttcttcccttccctt |
21583169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 21576298 - 21576395
Alignment:
| Q |
211 |
atggattttgttcaacaactgacttcccttgactggcaacaagaatcctaccctgcctttcatgatttcttcattatacctatcttcactctcttctt |
308 |
Q |
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| T |
21576298 |
atggatttgtttcaacaactgacctccgttgactggcaacaagaatccttccctgcttatcaagatttcttccttcttcctttcttcgctttcttctt |
21576395 |
T |
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