View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_12 (Length: 329)
Name: NF5368_low_12
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 3669480 - 3669176
Alignment:
| Q |
18 |
gtttgatcaaaatcatcctctcccaaagaaagatcagagaccatagagttgttgcatgatgaagaaggttgatgaatattttgagaatttgctcttctct |
117 |
Q |
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| T |
3669480 |
gtttgatcaaaatcatcctctcccaaagaaagatcagagaccatagagttgttgcatgatgaagaaggttgatgaatatattgagaatttgctcttctct |
3669381 |
T |
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| Q |
118 |
t---acactgaggcttaggatggttatgacttcctttatatactatttgagtaatttgtccatcatccaaagacctttcaactttcttcttcattgagca |
214 |
Q |
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| T |
3669380 |
ttgtacactgaggcttaggatggttatgacttcctttatatactatttgagtaatttgtccatcatccaaagacctttcaactttcttcttcattgagca |
3669281 |
T |
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| Q |
215 |
aattggattagtgcacttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatccatcttcttctgatttc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3669280 |
aattggattagtgcacttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatccatcttcttctgatttt |
3669181 |
T |
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| Q |
315 |
ctttg |
319 |
Q |
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||||| |
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| T |
3669180 |
ctttg |
3669176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 98 - 304
Target Start/End: Original strand, 26332419 - 26332622
Alignment:
| Q |
98 |
ttgagaatttgctcttctcttacactgaggcttaggatggttatgacttcctttatatactatttgagtaatttgtccatcatccaaagacctttcaact |
197 |
Q |
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| T |
26332419 |
ttgagagtttgttcttctattagactgaggcttagggtggttatgagttcccttatatacaatttcagtaatctgtccatc---caaatccctctcgact |
26332515 |
T |
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| Q |
198 |
ttcttcttcattgagcaaattggattagtgcacttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatc |
297 |
Q |
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| T |
26332516 |
ttcttcttcattgagcaatttggattcgtgcacttgtaataactacgcggattttcgcttcctttcacttgtttctgtccatattttctccaattgtaac |
26332615 |
T |
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| Q |
298 |
catcttc |
304 |
Q |
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||||||| |
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| T |
26332616 |
catcttc |
26332622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 40471438 - 40471514
Alignment:
| Q |
225 |
gtgcacttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatccatc |
301 |
Q |
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| T |
40471438 |
gtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatc |
40471514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 125 - 301
Target Start/End: Original strand, 26966955 - 26967128
Alignment:
| Q |
125 |
aggcttaggatggttatgacttcctttatatactatttgagtaatttgtccatcatccaaagacctttcaactttcttcttcattgagcaaattggatta |
224 |
Q |
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|||||||||||| |||||||| ||||| || ||||| | ||||||||||||||| ||| ||| |||||||| ||||| ||| ||| | || | | |
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| T |
26966955 |
aggcttaggatgattatgactacctttgtaaactatctcagtaatttgtccatct---aaacccctctcaacttttttctttgttggacaattagggtaa |
26967051 |
T |
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| Q |
225 |
gtgcacttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatccatc |
301 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |
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| T |
26967052 |
gtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatc |
26967128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 31615352 - 31615428
Alignment:
| Q |
225 |
gtgcacttgtaataacttcttggattttcacttcctttcacttgtttctctccatattttctccacttgtatccatc |
301 |
Q |
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||||| ||||| |||||||| |||||||||||||| || ||||| || | ||||||||||| ||| ||||||||||| |
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| T |
31615352 |
gtgcatttgtagtaacttctcggattttcacttcccttaacttgcttttgtccatattttcgccaattgtatccatc |
31615428 |
T |
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