View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5368_low_13 (Length: 321)

Name: NF5368_low_13
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5368_low_13
NF5368_low_13
[»] chr8 (11 HSPs)
chr8 (196-308)||(7613981-7614093)
chr8 (11-131)||(7614107-7614227)
chr8 (31-133)||(8550541-8550643)
chr8 (31-133)||(32987371-32987473)
chr8 (33-133)||(4836629-4836729)
chr8 (33-133)||(4842074-4842174)
chr8 (33-133)||(39022012-39022112)
chr8 (31-133)||(7058151-7058253)
chr8 (31-133)||(15260777-15260879)
chr8 (55-131)||(15181830-15181906)
chr8 (31-90)||(2750105-2750164)
[»] chr4 (12 HSPs)
chr4 (11-133)||(36621607-36621729)
chr4 (31-133)||(45256012-45256114)
chr4 (31-133)||(637891-637993)
chr4 (31-133)||(4168395-4168497)
chr4 (31-133)||(27764277-27764379)
chr4 (31-133)||(22181171-22181273)
chr4 (31-133)||(26447338-26447440)
chr4 (31-133)||(38485600-38485702)
chr4 (31-133)||(21097177-21097279)
chr4 (31-130)||(51837016-51837116)
chr4 (55-131)||(50563679-50563755)
chr4 (31-81)||(18923348-18923398)
[»] chr7 (11 HSPs)
chr7 (11-161)||(33797945-33798090)
chr7 (33-133)||(30428910-30429010)
chr7 (31-128)||(46573426-46573523)
chr7 (31-133)||(15974862-15974964)
chr7 (31-133)||(46024064-46024166)
chr7 (55-133)||(5757424-5757502)
chr7 (55-131)||(32090617-32090693)
chr7 (75-133)||(48690932-48690990)
chr7 (95-133)||(28396759-28396797)
chr7 (83-133)||(48305273-48305323)
chr7 (83-132)||(48691030-48691079)
[»] chr1 (9 HSPs)
chr1 (11-129)||(30802437-30802555)
chr1 (31-133)||(18056821-18056923)
chr1 (31-130)||(22348079-22348178)
chr1 (31-132)||(179646-179747)
chr1 (31-131)||(23320011-23320111)
chr1 (31-133)||(45889633-45889735)
chr1 (31-131)||(8402237-8402337)
chr1 (55-131)||(35198131-35198207)
chr1 (55-131)||(37639381-37639457)
[»] chr3 (10 HSPs)
chr3 (11-133)||(16277320-16277442)
chr3 (31-133)||(51362364-51362466)
chr3 (31-133)||(52987576-52987678)
chr3 (31-133)||(50754043-50754145)
chr3 (31-133)||(39099234-39099336)
chr3 (32-133)||(19385242-19385343)
chr3 (31-133)||(7045227-7045328)
chr3 (31-129)||(8718142-8718240)
chr3 (31-129)||(9070029-9070127)
chr3 (84-155)||(17627210-17627281)
[»] chr5 (10 HSPs)
chr5 (31-133)||(28070079-28070181)
chr5 (31-133)||(13362807-13362909)
chr5 (31-133)||(23335633-23335735)
chr5 (33-133)||(2826995-2827095)
chr5 (54-131)||(16668743-16668820)
chr5 (55-131)||(18465506-18465582)
chr5 (75-133)||(34329164-34329222)
chr5 (84-133)||(25017196-25017245)
chr5 (31-71)||(42512273-42512313)
chr5 (55-130)||(8948930-8949003)
[»] scaffold0194 (1 HSPs)
scaffold0194 (31-133)||(27644-27746)
[»] scaffold0097 (1 HSPs)
scaffold0097 (31-133)||(13650-13752)
[»] chr6 (7 HSPs)
chr6 (31-133)||(24737617-24737719)
chr6 (31-132)||(877246-877347)
chr6 (31-133)||(33346297-33346399)
chr6 (55-131)||(18611228-18611304)
chr6 (55-133)||(29157263-29157341)
chr6 (83-128)||(34399683-34399728)
chr6 (75-133)||(15034945-15035003)
[»] chr2 (7 HSPs)
chr2 (31-133)||(20709811-20709913)
chr2 (39-133)||(18298045-18298139)
chr2 (31-133)||(25192929-25193031)
chr2 (55-128)||(4281738-4281811)
chr2 (75-131)||(4579788-4579844)
chr2 (83-134)||(14551297-14551348)
chr2 (55-131)||(25995326-25995402)
[»] scaffold0238 (1 HSPs)
scaffold0238 (31-133)||(25158-25260)
[»] scaffold0337 (1 HSPs)
scaffold0337 (83-133)||(7054-7104)


Alignment Details
Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 7614093 - 7613981
Alignment:
Q  196 tcattagtttacactcaaatcagttgtcggctgacagtcaaacgtggctttcgagtcaaaataggtttggatgttgtattggaccttattattgtcatgg 295  Q
    ||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||    
T  7614093 tcattagtttacattcaaatcagttgtcggctgacagttaaacatggctttcgagtcaaaataggcttggatgttgtattggaccttactattgtcgtgg 7613994  T
Q  296 tagtggttaatga 308  Q
    |||||||||||||    
T  7613993 tagtggttaatga 7613981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 7614227 - 7614107
Alignment:
Q  11 atgaacatgactgttttggaagaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||| |||||||||    
T  7614227 atgaacatgactgttttggaagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctatgattattacacgtgtacattagatctga 7614128  T
Q  111 taattgtgaattgtttatgca 131  Q
    |  ||||||| ||||||||||    
T  7614127 tggttgtgaagtgtttatgca 7614107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 8550643 - 8550541
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||| ||||||||||||||||||||  ||||||| |||||||||    
T  8550643 agaaatgtttgaagcaaatgaagtttgatttggtgtaatttgagaagcttatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgc 8550544  T
Q  131 acg 133  Q
    |||    
T  8550543 acg 8550541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 32987371 - 32987473
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||| ||||||||||||||||||||  ||||||| |||||||||    
T  32987371 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgc 32987470  T
Q  131 acg 133  Q
    |||    
T  32987471 acg 32987473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 4836629 - 4836729
Alignment:
Q  33 aaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgcac 132  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||| ||||||||||||||||||||  ||||||| |||||||||||    
T  4836629 aaatgtttgaagcaaatgaagtttgatttggtgtagtttgaaaagcttaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcac 4836728  T
Q  133 g 133  Q
    |    
T  4836729 g 4836729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 4842074 - 4842174
Alignment:
Q  33 aaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgcac 132  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||| ||||||||||||||||||||  ||||||| |||||||||||    
T  4842074 aaatgtttgaagcaaatgaagtttgatttggtgtagtttgaaaagcttaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcac 4842173  T
Q  133 g 133  Q
    |    
T  4842174 g 4842174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 39022112 - 39022012
Alignment:
Q  33 aaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgcac 132  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||| || ||||||||||||||||| |||||||| |||||||||||    
T  39022112 aaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacatgtacactagatctgatgattgtgaagtgtttatgcac 39022013  T
Q  133 g 133  Q
    |    
T  39022012 g 39022012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 7058253 - 7058151
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||| |||||||||||||||||||||||||| ||||||||||| |||  || |||||||| |||||||||||||||| |||  ||||||| |||||||||    
T  7058253 agaagtgtttgaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatcggatggttgtgaagtgtttatgc 7058154  T
Q  131 acg 133  Q
    |||    
T  7058153 acg 7058151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 15260777 - 15260879
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||| |||||||||||||||||||||||| ||||||||||| |||| |  |||||||| ||||||||||||||| ||||  ||||||| |||||||||    
T  15260777 agaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagccttggattattaaacgtgtacactagatttgatggttgtgaagtgtttatgc 15260876  T
Q  131 acg 133  Q
    |||    
T  15260877 acg 15260879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 15181906 - 15181830
Alignment:
Q  55 ttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgca 131  Q
    ||||||| ||||||||||| || | || |||||||| ||||||||||||||||||||  ||||||| ||||||||||    
T  15181906 ttgatttggtgtagtttgagaaacctaagattattacacgtgtacactagatctgatgcttgtgaagtgtttatgca 15181830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 2750164 - 2750105
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattatta 90  Q
    |||||||||| ||| |||||||||||||||| ||||||||||| |||  |||||||||||    
T  2750164 agaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattatta 2750105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 36621607 - 36621729
Alignment:
Q  11 atgaacatgactgttttggaagaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||||| ||||||||| |||||||||    
T  36621607 atgaacatgactgttttggaagaaatgtttgaagcaaatgaagtttgatttggtgtagtttaagaagcataggattattacacgtgtacattagatctga 36621706  T
Q  111 taattgtgaattgtttatgcacg 133  Q
    |  ||||||| ||||||||||||    
T  36621707 tggttgtgaagtgtttatgcacg 36621729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 45256114 - 45256012
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||||||||||||||||||||||||||||  |||||||||| |||| || |||||||| |||||||||||| |||||||| ||||||| |||||||||    
T  45256114 agaaatgtttgaagcaaatgaagtttgatttgatgtagtttgaaaagcctaggattattacacgtgtacactatatctgatagttgtgaagtgtttatgc 45256015  T
Q  131 acg 133  Q
    |||    
T  45256014 acg 45256012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 637993 - 637891
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| ||  ||||||| || |||||||||||||||||  ||||||| |||||||||    
T  637993 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtacactagatctgatggttgtgaagtgtttatgc 637894  T
Q  131 acg 133  Q
    |||    
T  637893 acg 637891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 4168497 - 4168395
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||| ||||||||||||||||| ||||||||||| || | || |||||||| | ||||||||||||||||||  ||||||| |||||||||    
T  4168497 agaaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaaacctaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgc 4168398  T
Q  131 acg 133  Q
    |||    
T  4168397 acg 4168395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 27764379 - 27764277
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||| | ||||||||| ||||||||||| |||| || |||||||| ||||||||||||||||||||  ||| ||| |||||||||    
T  27764379 agaaatgtttgaagcaaataaggtttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatctgatggttgcgaagtgtttatgc 27764280  T
Q  131 acg 133  Q
    |||    
T  27764279 acg 27764277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 22181171 - 22181273
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||||||||| |||||||||||||||||| ||||||||||| || | || |||||||| |||||||||||| |||||||  ||||||| | |||||||    
T  22181171 agaaatgtttgaggcaaatgaagtttgatttggtgtagtttgagaaacctaggattattacacgtgtacactaaatctgatggttgtgaagtttttatgc 22181270  T
Q  131 acg 133  Q
    |||    
T  22181271 acg 22181273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 26447338 - 26447440
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||||||||||||||||||| |||||||| ||||| ||||  |||| ||  ||||||| ||||||||||||||||||||  ||||||| |||||||||    
T  26447338 agaaatgtttgaagcaaatgaaatttgatttggtgtaatttgtgaagcctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatgc 26447437  T
Q  131 acg 133  Q
    |||    
T  26447438 acg 26447440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 38485600 - 38485702
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||||||||||||||||||||||||||||  |||| ||||| |||| || |||||||| ||||||||| ||||||||||  |||||||  ||||||||    
T  38485600 agaaatgtttgaagcaaatgaagtttgatttaatgtattttgagaagcctaggattattacacgtgtacattagatctgatggttgtgaagcgtttatgc 38485699  T
Q  131 acg 133  Q
    |||    
T  38485700 acg 38485702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 21097279 - 21097177
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||| ||| |||||| ||  ||||||| ||||||| ||||||||| ||  ||||||| ||||||| |    
T  21097279 agaaatgtttgaagcaaatgaagtttgatttggtgtaatttaataagcttagaattattacacgtgtaaactagatctaatggttgtgaagtgtttatac 21097180  T
Q  131 acg 133  Q
    |||    
T  21097179 acg 21097177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 51837016 - 51837116
Alignment:
Q  31 agaaatgtttgaagcaaa-tgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatg 129  Q
    |||||||||||||| ||| ||||||||||||| ||||||||||| |||| || |||||||| ||||||||| || |||||||  ||||||| | ||||||    
T  51837016 agaaatgtttgaagtaaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacattaaatctgatggttgtgaagtatttatg 51837115  T
Q  130 c 130  Q
    |    
T  51837116 c 51837116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 50563679 - 50563755
Alignment:
Q  55 ttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgca 131  Q
    ||||||| ||||||||||| || | ||| ||||||| ||||||||||||||||||||  ||||||| ||||||||||    
T  50563679 ttgatttggtgtagtttgagaaacctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 50563755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 18923398 - 18923348
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcata 81  Q
    |||||| |||||||||||||||||||||||| ||||||||||| |||||||    
T  18923398 agaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcata 18923348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 33798090 - 33797945
Alignment:
Q  11 atgaacatgactgttttggaagaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctga 110  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||| |||  || |||||||| ||||||| |||||||||||    
T  33798090 atgaacatgattgttttggaagaaatgtttgaagcaaatgaagtttgatttgatgtagtttgagaagtctaggattattacacgtgtatactagatctga 33797991  T
Q  111 taattgtgaattgtttatgcacgttgccttatgcaccataactttgcccat 161  Q
    |  ||||||| ||||||||||||      ||||||||||||||||||||||    
T  33797990 tggttgtgaaatgtttatgcacg-----gtatgcaccataactttgcccat 33797945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 30429010 - 30428910
Alignment:
Q  33 aaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgcac 132  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||| ||||||||||||||||||||  ||||||| |||||||||||    
T  30429010 aaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaaatgtttatgcac 30428911  T
Q  133 g 133  Q
    |    
T  30428910 g 30428910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 46573426 - 46573523
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttat 128  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||| ||||||||||||||||||||  ||||||| |||||||    
T  46573426 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 46573523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 15974862 - 15974964
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||||||||||||| |||||||||||||| ||||| |||||||||| || |||||||| | |||||||||| || ||||  ||||||| |||||||||    
T  15974862 agaaatgtttgaagcagatgaagtttgatttggtgtactttgataagcctaagattattacatgtgtacactaaatatgatggttgtgaagtgtttatgc 15974961  T
Q  131 acg 133  Q
    |||    
T  15974962 acg 15974964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 46024166 - 46024064
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||| ||||||||||||||||||||||||  |||||||||| |||  || |||||||| |||||||||||| |||||||  ||||||| |||||||||    
T  46024166 agaaatatttgaagcaaatgaagtttgatttaatgtagtttgagaagtctaggattattacacgtgtacactatatctgatggttgtgaagtgtttatgc 46024067  T
Q  131 acg 133  Q
    |||    
T  46024066 acg 46024064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 5757502 - 5757424
Alignment:
Q  55 ttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgcacg 133  Q
    ||||||| ||||||||||| |||  || |||||||| ||||||||||||||||||||  ||||||| ||||||||||||    
T  5757502 ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacg 5757424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 32090693 - 32090617
Alignment:
Q  55 ttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgca 131  Q
    ||||||| ||||||||||| |||| ||||||||||| ||||||| ||||||| ||||  || |||||||||||||||    
T  32090693 ttgatttggtgtagtttgagaagcctatgattattacacgtgtatactagatttgatggttctgaattgtttatgca 32090617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 48690990 - 48690932
Alignment:
Q  75 aagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgcacg 133  Q
    |||| ||||||||||| ||||||||||||||| ||||  ||||||| ||||||||||||    
T  48690990 aagcctatgattattacacgtgtacactagatttgatggttgtgaactgtttatgcacg 48690932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 28396797 - 28396759
Alignment:
Q  95 tgtacactagatctgataattgtgaattgtttatgcacg 133  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  28396797 tgtacactagatctgatgattgtgaaatgtttatgcacg 28396759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 48305323 - 48305273
Alignment:
Q  83 gattattatacgtgtacactagatctgataattgtgaattgtttatgcacg 133  Q
    ||||||||||||||||||||||||| |||  |||| || ||||||||||||    
T  48305323 gattattatacgtgtacactagatccgatgtttgtaaagtgtttatgcacg 48305273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 48691079 - 48691030
Alignment:
Q  83 gattattatacgtgtacactagatctgataattgtgaattgtttatgcac 132  Q
    |||||||| ||||||||||||||||||||  ||||||| ||| |||||||    
T  48691079 gattattacacgtgtacactagatctgatggttgtgaagtgtctatgcac 48691030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 30802555 - 30802437
Alignment:
Q  11 atgaacatgactgttttggaagaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctga 110  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||||||||||||    
T  30802555 atgaacatgactattttggaagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaagattattacacgtgtacactagatctga 30802456  T
Q  111 taattgtgaattgtttatg 129  Q
    |  ||||||| ||||||||    
T  30802455 tggttgtgaaatgtttatg 30802437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 18056923 - 18056821
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||| ||||||||||||||||||||  ||||||| |||||||||    
T  18056923 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgc 18056824  T
Q  131 acg 133  Q
    |||    
T  18056823 acg 18056821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 22348178 - 22348079
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||| ||||||||||||||| ||||  ||||||| |||||||||    
T  22348178 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgc 22348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 179747 - 179646
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||||||| |||||||||||||||||||| ||||||||||| |||| |  |||||||| ||||||||||||||||||||  ||||||| |||||||||    
T  179747 agaaatgttttaagcaaatgaagtttgatttggtgtagtttgagaagcttgggattattacacgtgtacactagatctgatggttgtgaagtgtttatgc 179648  T
Q  131 ac 132  Q
    ||    
T  179647 ac 179646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 23320011 - 23320111
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||||||| |||||||||||||||||||| ||||||||||| |||  || |||||||| ||||||||||||||||||||  ||||||| |||||||||    
T  23320011 agaaatgtttaaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgc 23320110  T
Q  131 a 131  Q
    |    
T  23320111 a 23320111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 45889735 - 45889633
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||||||||||| ||||||| |||||||| ||||||||||| |||| || |||||||| || |||| ||||||||||||  |||| || |||||||||    
T  45889735 agaaatgtttgaaggaaatgaaatttgatttggtgtagtttgagaagcctaagattattacacatgtatactagatctgatggttgtaaaatgtttatgc 45889636  T
Q  131 acg 133  Q
    |||    
T  45889635 acg 45889633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 8402237 - 8402337
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||||||||||||| |||||||||||||| || |||||||| || | || |||||||| | ||||||||||||||||||  || |||| |||||||||    
T  8402237 agaaatgtttgaagcagatgaagtttgatttggtttagtttgagaaacctaggattattacatgtgtacactagatctgatggttatgaagtgtttatgc 8402336  T
Q  131 a 131  Q
    |    
T  8402337 a 8402337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 35198131 - 35198207
Alignment:
Q  55 ttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgca 131  Q
    ||||||||||||||||||| |||  || |||||||| ||||||||||||||||||||   |||||| ||||||||||    
T  35198131 ttgattttgtgtagtttgaaaagtctaggattattacacgtgtacactagatctgatggctgtgaagtgtttatgca 35198207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 37639457 - 37639381
Alignment:
Q  55 ttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgca 131  Q
    ||||||| ||||||||||| |||  ||| ||||||| ||||||||||||||||||||  ||||||| ||||||||||    
T  37639457 ttgatttggtgtagtttgagaagtctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 37639381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 16277320 - 16277442
Alignment:
Q  11 atgaacatgactgttttggaagaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctga 110  Q
    |||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| || |||||||| ||||||||||||||| |||    
T  16277320 atgaacatgactattttggaataaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatatga 16277419  T
Q  111 taattgtgaattgtttatgcacg 133  Q
    |  ||||||| ||||||||||||    
T  16277420 tggttgtgaagtgtttatgcacg 16277442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 51362364 - 51362466
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||||| |||||||  ||||||| |||||||||    
T  51362364 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactaaatctgatggttgtgaagtgtttatgc 51362463  T
Q  131 acg 133  Q
    |||    
T  51362464 acg 51362466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 52987576 - 52987678
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||| |||||||||||||||||||||||| ||||||||||| |||| || |||||||| ||||||||||||||||||||  ||||||| |||||||||    
T  52987576 agaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgc 52987675  T
Q  131 acg 133  Q
    |||    
T  52987676 acg 52987678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 50754145 - 50754043
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||| |||||||| ||||||||||||||||| ||||||||||| |||| || |||||||| ||||||||||||||||||||  ||||||| |||||||||    
T  50754145 agaagtgtttgaatcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgc 50754046  T
Q  131 acg 133  Q
    |||    
T  50754045 acg 50754043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 39099336 - 39099234
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||||||| || ||||||||||||||||| ||||||||||| |||| || |||||||| ||||||||||||||||||||  ||||||| | |||||||    
T  39099336 agaaatgttttaaacaaatgaagtttgatttagtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaaatatttatgc 39099237  T
Q  131 acg 133  Q
    |||    
T  39099236 acg 39099234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 19385242 - 19385343
Alignment:
Q  32 gaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgca 131  Q
    |||||| |||||||||||||||||||||||  |||||||||| |||| ||  ||||||| |||||||||||| |||||||  ||||||| ||||||||||    
T  19385242 gaaatgattgaagcaaatgaagtttgatttgatgtagtttgagaagcctagaattattacacgtgtacactaaatctgatggttgtgaagtgtttatgca 19385341  T
Q  132 cg 133  Q
    ||    
T  19385342 cg 19385343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 7045227 - 7045328
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||| |||||||||||  |||||| ||| |||| || |||||||| ||||||||||||||||||||  ||||||| ||||||| |    
T  7045227 agaaatgtttgaagcaaat-aagtttgatttgatgtagtctgagaagcctacgattattacacgtgtacactagatctgatggttgtgaagtgtttatac 7045325  T
Q  131 acg 133  Q
    |||    
T  7045326 acg 7045328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 8718240 - 8718142
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatg 129  Q
    |||||||||| || ||||||||||||||||| ||||||||| | |||| || |||||||| || |||||||||||||||||  ||||||| | ||||||    
T  8718240 agaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtacactagatctgatggttgtgaagtatttatg 8718142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 9070127 - 9070029
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatg 129  Q
    |||||||||| || ||||||||||||||||| ||||||||| | |||| || |||||||| || |||||||||||||||||  ||||||| | ||||||    
T  9070127 agaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtacactagatctgatggttgtgaagtatttatg 9070029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 17627210 - 17627281
Alignment:
Q  84 attattatacgtgtacactagatctgataattgtgaattgtttatgcacgttgccttatgcaccataacttt 155  Q
    ||||||| ||||||||||||||||||||  ||||||| |||||||||||    |||||||||||||||||||    
T  17627210 attattacacgtgtacactagatctgatggttgtgaagtgtttatgcacaaatccttatgcaccataacttt 17627281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 28070079 - 28070181
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||  || |||||||| ||||||||||||||||||||| ||||||| |||||||||    
T  28070079 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatagttgtgaagtgtttatgc 28070178  T
Q  131 acg 133  Q
    |||    
T  28070179 acg 28070181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 13362909 - 13362807
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||| |||| |||||||||||||||  ||||||| |||||||||    
T  13362909 agaaatgtttgaagcaaatgaattttgatttggtgtagtttgagaagcctatgattattacacgtatacactagatctgatggttgtgaagtgtttatgc 13362810  T
Q  131 acg 133  Q
    |||    
T  13362809 acg 13362807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 23335633 - 23335735
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||||||||| ||||||||| |||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||  ||||||| |||||||||    
T  23335633 agaaatgtttgatgcaaatgaactttgatttggtgtagtttgagaagcctatgattattacacgtgtacactagatctgatggttgtgaaatgtttatgc 23335732  T
Q  131 acg 133  Q
    |||    
T  23335733 acg 23335735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 2826995 - 2827095
Alignment:
Q  33 aaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgcac 132  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||| || ||| |||| ||||||||||||||||||||  |||| || |||||||||||    
T  2826995 aaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaagataattacacgtgtacactagatctgatggttgtaaagtgtttatgcac 2827094  T
Q  133 g 133  Q
    |    
T  2827095 g 2827095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 16668743 - 16668820
Alignment:
Q  54 tttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgca 131  Q
    |||||||| ||||||||||| |||| || |||||||| ||||||||||||||||||||  ||||||| ||||||||||    
T  16668743 tttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 16668820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 18465506 - 18465582
Alignment:
Q  55 ttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgca 131  Q
    ||||||| ||||||||||| |||  || |||||||| ||||||||||||||||||||  ||||||| ||||||||||    
T  18465506 ttgatttggtgtagtttgagaagtctaagattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 18465582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 34329222 - 34329164
Alignment:
Q  75 aagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgcacg 133  Q
    |||| |||||||||||| |||||||||||||||||||  ||||||| ||||||||||||    
T  34329222 aagcctatgattattattcgtgtacactagatctgatggttgtgaagtgtttatgcacg 34329164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 25017196 - 25017245
Alignment:
Q  84 attattatacgtgtacactagatctgataattgtgaattgtttatgcacg 133  Q
    ||||||| ||||||||||||||||||||  ||||||| ||||||||||||    
T  25017196 attattacacgtgtacactagatctgatggttgtgaagtgtttatgcacg 25017245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 42512313 - 42512273
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagttt 71  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  42512313 agaaatgtttgaagtaaatgaagtttgatttggtgtagttt 42512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 8949003 - 8948930
Alignment:
Q  55 ttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||| ||||||||||| |||| || |||||| |  ||||||||||| |||||||| || |||| |||||||||    
T  8949003 ttgatttggtgtagtttgagaagcctaggattatca--cgtgtacactaaatctgatagttttgaagtgtttatgc 8948930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 27746 - 27644
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| ||  ||||||| ||||||||||||||||| ||| ||||||| |||||||||    
T  27746 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctagaattattacacgtgtacactagatcttatagttgtgaagtgtttatgc 27647  T
Q  131 acg 133  Q
    |||    
T  27646 acg 27644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 13752 - 13650
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||| | ||||||||||||||||||  ||||||| |||||||||    
T  13752 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgc 13653  T
Q  131 acg 133  Q
    |||    
T  13652 acg 13650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 24737617 - 24737719
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||||||| | |||| || |||||||| ||||||||||||||||||||  ||||||| |||||||||    
T  24737617 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgc 24737716  T
Q  131 acg 133  Q
    |||    
T  24737717 acg 24737719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 877347 - 877246
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||  ||||| ||  ||||||| |||||||||    
T  877347 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattatacgtgtacacctgatctaatggttgtgaagtgtttatgc 877248  T
Q  131 ac 132  Q
    ||    
T  877247 ac 877246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 33346297 - 33346399
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    |||||||||||||||||| ||||||||||||   ||||||||| |||| ||| ||||||| ||||||||||||||| ||||  ||||||| |||||||||    
T  33346297 agaaatgtttgaagcaaacgaagtttgatttgacgtagtttgagaagcctataattattacacgtgtacactagatttgatggttgtgaagtgtttatgc 33346396  T
Q  131 acg 133  Q
    |||    
T  33346397 acg 33346399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 18611304 - 18611228
Alignment:
Q  55 ttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgca 131  Q
    ||||||| |||| |||||| |||| ||||||||||| ||||||||||||||||||||  ||||||| ||||||||||    
T  18611304 ttgatttggtgtggtttgagaagcctatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 18611228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 29157341 - 29157263
Alignment:
Q  55 ttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgcacg 133  Q
    ||||||| ||||||||||| |||| ||  ||||||| ||||||||||||||||||||  |||| || ||||||||||||    
T  29157341 ttgatttggtgtagtttgagaagcctagtattattacacgtgtacactagatctgatggttgtaaagtgtttatgcacg 29157263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 34399728 - 34399683
Alignment:
Q  83 gattattatacgtgtacactagatctgataattgtgaattgtttat 128  Q
    |||||||| |||||||||||||||||||| |||||||| |||||||    
T  34399728 gattattacacgtgtacactagatctgatgattgtgaagtgtttat 34399683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 15034945 - 15035003
Alignment:
Q  75 aagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgcacg 133  Q
    |||| ||||||||||| || |||||||||||||||||  ||||||||  ||||||||||    
T  15034945 aagcctatgattattacacatgtacactagatctgatggttgtgaatgatttatgcacg 15035003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 20709913 - 20709811
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||| | ||||||||||||||||||  ||||||| |||||||||    
T  20709913 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgc 20709814  T
Q  131 acg 133  Q
    |||    
T  20709813 acg 20709811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 18298045 - 18298139
Alignment:
Q  39 ttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgcacg 133  Q
    ||||||||||||||||||||||| ||||||||||| |||| || |||||||| ||||||||||||||||||||  ||||||| ||||||||||||    
T  18298045 ttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacg 18298139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 25193031 - 25192929
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| |||| ||  ||||||| ||||||||||||||||| ||  ||||||| |||||||||    
T  25193031 agaaatgtttgaagcaaatgaagtttgatttggtgtaatttgagaagcctagaattattacacgtgtacactagatctaatggttgtgaagtgtttatgc 25192932  T
Q  131 acg 133  Q
    |||    
T  25192931 acg 25192929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 4281738 - 4281811
Alignment:
Q  55 ttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttat 128  Q
    |||||||  |||||||||| || | || |||||||| ||||||||||||||||||||  ||||||| |||||||    
T  4281738 ttgatttgctgtagtttgagaaacctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 4281811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 4579788 - 4579844
Alignment:
Q  75 aagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgca 131  Q
    ||||||| |||||||| ||||||||||||||||||||  |||| || ||||||||||    
T  4579788 aagcataagattattacacgtgtacactagatctgatggttgtaaagtgtttatgca 4579844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 14551297 - 14551348
Alignment:
Q  83 gattattatacgtgtacactagatctgataattgtgaattgtttatgcacgt 134  Q
    |||||||| || |||||||||||||||||  ||||||| |||||||||||||    
T  14551297 gattattacacatgtacactagatctgatggttgtgaagtgtttatgcacgt 14551348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 25995402 - 25995326
Alignment:
Q  55 ttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgca 131  Q
    ||||||| ||||| |||||  ||| || |||||||| |||||||||||| |||||||  ||||||| | ||||||||    
T  25995402 ttgatttggtgtaatttgagtagcctaggattattacacgtgtacactaaatctgatggttgtgaagtatttatgca 25995326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 25158 - 25260
Alignment:
Q  31 agaaatgtttgaagcaaatgaagtttgattttgtgtagtttgataagcatatgattattatacgtgtacactagatctgataattgtgaattgtttatgc 130  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || | || |||||| | |||||||||||| |||||||  ||||||| |||||||||    
T  25158 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctaagattatgacacgtgtacactaaatctgatggttgtgaagtgtttatgc 25257  T
Q  131 acg 133  Q
    |||    
T  25258 acg 25260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 7104 - 7054
Alignment:
Q  83 gattattatacgtgtacactagatctgataattgtgaattgtttatgcacg 133  Q
    |||||||| | ||||||||||||||||||  ||||||| ||||||||||||    
T  7104 gattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacg 7054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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