View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_16 (Length: 286)
Name: NF5368_low_16
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 19377764 - 19377501
Alignment:
| Q |
1 |
tgattgatcgcaaggtgtttgaatatgattatgtagaaatattgtagtatgaaagaagctaggaaaagaaatagagaaacatccaaacaagaagaattat |
100 |
Q |
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| T |
19377764 |
tgattgatcgtagagtgtttgaatatgattatgaagaaatattggagtacgaaagaagctaggaaaagaaacagagaaacatgcaaacaagaaatcttat |
19377665 |
T |
|
| Q |
101 |
gctattttgtaagacctggtctgtattgtttgaaatttatcctcttttgtaagactttggtattttcattgcaaatatttatataattagaaaaatatcg |
200 |
Q |
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||| |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19377664 |
gctgttttttaagactttgtctgtattgtttgaaatttatcctcttttgtaagactttggtattttcattgcaaatatttatataattagacaaatat-- |
19377567 |
T |
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| Q |
201 |
agaggtaatagaaagaagtaatccaatttctccacaaaactatctgcaagtaaggttgtctaaaatcact |
270 |
Q |
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| T |
19377566 |
agagataataaaaagaagtaatccactttctccacaaaactatct----gtaagattgtctaaaatcact |
19377501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 92 - 246
Target Start/End: Complemental strand, 19426681 - 19426527
Alignment:
| Q |
92 |
aagaattatgctattttgtaagacctggtctgtattgtttgaaatttatcctcttttgtaagactttggtattttcattgcaaatatttatataattaga |
191 |
Q |
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|||| ||||||| ||||||||||| | || ||||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||| |||||||||||| | |
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| T |
19426681 |
aagacttatgctgttttgtaagacttagtttgtatagtttgaaatctatcctcttttgtaatactttggtactttcattgcaaatttttatataattaca |
19426582 |
T |
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| Q |
192 |
aaaatatcgagaggtaatagaaagaagtaatccaatttctccacaaaactatctg |
246 |
Q |
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| T |
19426581 |
caaatacagagagataatagaaagaattaatctactttctccacaaaactgtctg |
19426527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 19355866 - 19355652
Alignment:
| Q |
18 |
tttgaatatgattatgtagaaatattgtagtatgaaagaagctaggaa--aagaaatagaga--aacatccaaacaagaagaattatgctattttgtaag |
113 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||| || | |||||||||||| |||||||||||| ||||||| ||||||||| |
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| T |
19355866 |
tttgaatatgattatgtacaaatattggagtatgaaagaagttaattagtaagaaatagagagaaacatccaaacac------ttatgctgttttgtaag |
19355773 |
T |
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| Q |
114 |
acctggtctgtattgtttgaaatttatcctcttttgtaagactttggtattttcattgcaaatatttatataattagaaaaatatcgagaggtaatagaa |
213 |
Q |
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| T |
19355772 |
acttagtttgtatagtttgaaatctatcatcttt-----------ggtattttcattgcaaatttttatataattagacaaatatagagagataatagaa |
19355684 |
T |
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| Q |
214 |
agaagtaatccaatttctccacaaaactatct |
245 |
Q |
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| T |
19355683 |
agaagtaatctacattctccacaaaactatct |
19355652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 105 - 245
Target Start/End: Complemental strand, 19336083 - 19335946
Alignment:
| Q |
105 |
ttttgtaagacctggtctgtattgtttgaaatttatcctcttttgtaagactttggtattttcattgcaaatatttatataattagaaaaatatcgagag |
204 |
Q |
| |
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||||||| ||| | |||||||| || |||||| | || || ||||||| ||||||||||||||||||||||| ||||||||||| || |||||| |||| |
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| T |
19336083 |
ttttgtatgacttagtctgtatagtatgaaatctttcatcctttgtaatactttggtattttcattgcaaatttttatataatt-gacaaatat--agag |
19335987 |
T |
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| Q |
205 |
gtaatagaaagaagtaatccaatttctccacaaaactatct |
245 |
Q |
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|||||||||||||||||| | ||||||||||||||||||| |
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| T |
19335986 |
ataatagaaagaagtaatctactttctccacaaaactatct |
19335946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 19416103 - 19416064
Alignment:
| Q |
15 |
gtgtttgaatatgattatgtagaaatattgtagtatgaaa |
54 |
Q |
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| T |
19416103 |
gtgtttgaatatgattatgtagaaatattggaatatgaaa |
19416064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 24496441 - 24496487
Alignment:
| Q |
194 |
aatatcgagaggtaatagaaagaagtaatccaatttctccacaaaac |
240 |
Q |
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||||| ||||| ||||||||||||||| |||| |||||||||||||| |
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| T |
24496441 |
aatatagagagataatagaaagaagtattccactttctccacaaaac |
24496487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 13663978 - 13664017
Alignment:
| Q |
15 |
gtgtttgaatatgattatgtagaaatattgtagtatgaaa |
54 |
Q |
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| T |
13663978 |
gtgtttgaatatgattatgtagaaatattggaatatgaaa |
13664017 |
T |
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