View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_19 (Length: 256)
Name: NF5368_low_19
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 51186259 - 51186491
Alignment:
| Q |
18 |
cttcactctcccatcacacttattattatcaccatccaaacacacattctcatcctccgaaaaaaccttaatcctccaaaccttaaatgtttggtccaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51186259 |
cttcactctcccatcacacttattattatcaccatctaaacacacattctcatcctccgaaaaaaccttaatcctccaaaccttaaatgtttggtccaaa |
51186358 |
T |
|
| Q |
118 |
cttgcactataaaccaaaaatcctacaacaactttctccatctcaagacaagcagccaaacatctaacaggtcctctatgtccatccaaaaccatcaaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51186359 |
cttgcactataaaccaaaaatcctacaacaactttctccatctcaagacaagcagccaaacatctaacaggtcctctatgtccatccaaaaccatcaaac |
51186458 |
T |
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| Q |
218 |
actcatgataacaactatcttcctctctgctcc |
250 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
51186459 |
actcatgataacaactatcttcctctcttctcc |
51186491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 14170493 - 14170287
Alignment:
| Q |
18 |
cttcactctcccatcacacttattattatcaccatccaaacacacattctcatcctccgaaaaaaccttaatcctccaaaccttaaatgtttggtccaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14170493 |
cttcactctcccatcacacttattattatcaccatccaaacacacattctcatcctcagaaaaaaccttaatcctccaaaccttaaacgtttggtccaaa |
14170394 |
T |
|
| Q |
118 |
cttgcactataaaccaaaaatcctacaacaactttctccatctcaagacaagcagccaaacatctaacaggtcctctatgtccatccaaaaccatcaaac |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14170393 |
cttgcactataaaccaaaaatcctacaacaactttctccatttcaagacaagcagccaaacatctcacaggtcctctatgtccatccaaaaccatcaaac |
14170294 |
T |
|
| Q |
218 |
actcatg |
224 |
Q |
| |
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||||||| |
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|
| T |
14170293 |
actcatg |
14170287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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