View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_2 (Length: 437)
Name: NF5368_low_2
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 2471045 - 2470611
Alignment:
| Q |
1 |
caagaacacgttggcatgtatattgtaattggacatcatctgaatgcatttgatgaagataagtttattttggttaaacggttcgtagaagtttgtttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2471045 |
caagaacacgttggcatgtatattgtaattggacatcatctgaatgcatttgatgaagataagtttattttggttaaacggttcgtagaagtttgtttga |
2470946 |
T |
|
| Q |
101 |
gtttcactcctggatcgaatccaatgggaaaatacttcagttgctaataatgtcatcggtgaaggagattgtgatgaaaa-----------gcaaacacg |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
2470945 |
gtttcactcctggatcgaatccaatgggaaaatacttcagctgttaataatgtcatcggtgaaggagattgtgatgagaaaatggacggtagcaaacacg |
2470846 |
T |
|
| Q |
190 |
aaattgttctgaaaaagaggtaccatttgcaaggaatggagaagaagaaaag-ctcaacatgcgtcactagtggcgaatgcggtgcaactgctcatgatt |
288 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
2470845 |
aaattgttctgaaaaagaggtaccagttgcaaggaatggagaagaagaaaaggctcaacatacgtcactagtggcgaatgcggtgcaactgctcatgact |
2470746 |
T |
|
| Q |
289 |
ctcaacagagacaccttagtttgtacaaaaatttctgtcagtgtatttggatgagtcctttgatttatatcatcacttattttctttggactcgtcttct |
388 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2470745 |
ctcaacagacacaccttagtttgtacaaaaatttctgtcagtgtatttggatgagtcctttgatttatatcatcacttattttctttggacttgtcttct |
2470646 |
T |
|
| Q |
389 |
tttaccttgtacagccgctgctgacagaaaattct |
423 |
Q |
| |
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| T |
2470645 |
tttaccttgtacagccgctgctgacagaaaattct |
2470611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 2459544 - 2459376
Alignment:
| Q |
16 |
atgtatattgtaattggacatcatctgaatgcatttgatgaagataagtttatttt-------ggttaaacggttcgtagaagtttgtttgagtttcact |
108 |
Q |
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||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||||| || ||||| ||| ||| ||||||||||| ||||||| |
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| T |
2459544 |
atgtatattttaattggacatcatccgaatgcatttgatcaagattagtttattttaattagatgtaaaacgattcttagcagtttgtttgaatttcact |
2459445 |
T |
|
| Q |
109 |
cctggatcgaatccaatgggaaaatacttcagttgctaataatgtcatcggtgaaggagattgtgatga |
177 |
Q |
| |
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|| | ||| |||| || ||||||||||| || || |||||||||||||| |||||||||| |||||| |
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| T |
2459444 |
ccagtatctaatctaaccggaaaatactttagctgtgaataatgtcatcggcgaaggagattatgatga |
2459376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 5094326 - 5094415
Alignment:
| Q |
16 |
atgtatattgtaattggacatcatctgaatgcatttgatgaagataagtttattttggttaaacggttcgtagaagtttgtttgagtttc |
105 |
Q |
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| T |
5094326 |
atgtacattttaattggacttcatctgaatgcatttgatgaagattaatttattttggttaaacgattgttagcattttgtttgtgtttc |
5094415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 2476425 - 2476365
Alignment:
| Q |
15 |
catgtatattgtaattggacatcatctgaatgcatttgatgaagataagtttattttggtt |
75 |
Q |
| |
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|||||||||| ||||| ||| ||||||||||| |||||||||||| |||||||||||||| |
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| T |
2476425 |
catgtatattttaatttgacttcatctgaatgtatttgatgaagaatagtttattttggtt |
2476365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 2466308 - 2466245
Alignment:
| Q |
101 |
gtttcactcctggatcgaatccaatgggaaaatacttcagttgctaataatgtcatcggtgaag |
164 |
Q |
| |
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||||||||||| |||||||||||| ||||| ||||||||| || ||||||||||| ||||||| |
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| T |
2466308 |
gtttcactcctagatcgaatccaaagggaacatacttcagctgtgaataatgtcattggtgaag |
2466245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 2343091 - 2343149
Alignment:
| Q |
20 |
atattgtaattggacatcatctgaatgcatttgatgaagataagtttattttggttaaa |
78 |
Q |
| |
|
||||| |||||| || |||||| |||||||||||||||||| ||||||||| ||||||| |
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|
| T |
2343091 |
atattttaattgaacttcatctaaatgcatttgatgaagattagtttatttcggttaaa |
2343149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 2462153 - 2462083
Alignment:
| Q |
199 |
tgaaaaagaggtaccatttgcaaggaatggagaagaagaaa-agctcaacatgcgtcactagtggcgaatg |
268 |
Q |
| |
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|||| ||||||||||| ||||| |||||||||||||||||| |||| ||||||| |||||| |||||||| |
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| T |
2462153 |
tgaagaagaggtaccagttgcagggaatggagaagaagaaagagctgaacatgcctcactacaggcgaatg |
2462083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 2544408 - 2544332
Alignment:
| Q |
28 |
attggacatcatctgaatgcatttgatgaagataagtttattttggttaaacggttcgtagaagtttgtttgagttt |
104 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||| |||||| | || ||||| | ||| ||||| ||||||||||||| |
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| T |
2544408 |
attggactttatctgaatgcacttgatgaagattagtttaatatgtttaaatgattcttagaattttgtttgagttt |
2544332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 5107425 - 5107469
Alignment:
| Q |
36 |
tcatctgaatgcatttgatgaagataagtttattttggttaaacg |
80 |
Q |
| |
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|||||||||||||||||||||| || |||| || ||||||||||| |
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| T |
5107425 |
tcatctgaatgcatttgatgaaaattagttaatcttggttaaacg |
5107469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 43282068 - 43282130
Alignment:
| Q |
333 |
atttggatgagtcctttgatttatatcatcacttattttctttggactcgtcttcttttacctt |
396 |
Q |
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||||||| |||| ||||| |||||| || || ||||||||||||||| |||||||||||||||| |
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| T |
43282068 |
atttggacgagttctttgctttata-caacatttattttctttggacccgtcttcttttacctt |
43282130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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