View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_23 (Length: 248)
Name: NF5368_low_23
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 5389979 - 5390081
Alignment:
| Q |
18 |
tttttatcttatgttcgtcatttctggagtggccactgacaatagagcggtaatctcctttgcccttgtattggaaagtgttgaaatattgtatattcaa |
117 |
Q |
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| T |
5389979 |
tttttatcttatgttcgtcatttctggagtggccactgacaatagagcggtaatctcctttgcccttgtattgaaaactgttaaaatattgtatattcaa |
5390078 |
T |
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| Q |
118 |
cca |
120 |
Q |
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||| |
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| T |
5390079 |
cca |
5390081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 5403325 - 5403395
Alignment:
| Q |
18 |
tttttatcttatgttcgtcatttctggagtggccactgacaatagagcggtaatctcctttgcccttgtat |
88 |
Q |
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| T |
5403325 |
tttttatcttatgttcgtcatatctggagtggccaccgatgatagagcggtaatctcctttgcccttgtat |
5403395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 5397713 - 5397760
Alignment:
| Q |
25 |
cttatgttcgtcatttctggagtggccactgacaatagagcggtaatc |
72 |
Q |
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| T |
5397713 |
cttatgttcatcatttctggagttgccactgataatagagcggtaatc |
5397760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 5407176 - 5407130
Alignment:
| Q |
25 |
cttatgttcgtcatttctggagtggccactgacaatagagcggtaat |
71 |
Q |
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| T |
5407176 |
cttatgttcgtcatttctggagttgccaccgataatagagcggtaat |
5407130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 36268387 - 36268448
Alignment:
| Q |
10 |
catcatca-tttttatcttatgttcgtcatttctggagtggccactgacaatagagcggtaa |
70 |
Q |
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|||||||| |||||| |||||||| |||| |||||||| |||||||| ||||||||||||| |
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| T |
36268387 |
catcatcactttttaccttatgtttatcatatctggagttgccactgataatagagcggtaa |
36268448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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