View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_24 (Length: 248)
Name: NF5368_low_24
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 19493645 - 19493420
Alignment:
| Q |
5 |
aagttatatccggagaccgaaatgttaaactcggctgtgagttgggtgccgttgacagttagtgagttgagtgaaccctcggattcgacatcaaaggatg |
104 |
Q |
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| T |
19493645 |
aagttatatccggagaccgaaatgttaaactcggctgtgagttgggtgccgttgacagttagtgagttgagtgaaccctcggattcgacatcgaaggatg |
19493546 |
T |
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| Q |
105 |
gagaatcgggaacaacgtccattgatagaataatgtatgtaagaatcagaacaaaagggaccaaaatgatgagacggctgcagccaatgaaggccggatg |
204 |
Q |
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| T |
19493545 |
gagaatcgggaacaacgtccattgatagaataatgtatgtaagaatcagaacaaaagggaccaaaatgatgagacggctgcagccaatgaaggccggatg |
19493446 |
T |
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| Q |
205 |
attttctagggtttctttgtcagtag |
230 |
Q |
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|||||||||||||||||||||||||| |
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| T |
19493445 |
attttctagggtttctttgtcagtag |
19493420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 19530574 - 19530498
Alignment:
| Q |
17 |
gagaccgaaatgttaaactcggctgtgagttgggtgccgttgacagttagtgagttgagtgaaccctcggattcgac |
93 |
Q |
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| T |
19530574 |
gagaccgaaatgttgagctcggctgagaattgggggccgttaacagttagtgagttgagtgaacccacggagtcgac |
19530498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 19125475 - 19125539
Alignment:
| Q |
18 |
agaccgaaatgttaaactcggctgtgagttgggtgccgttgacagttagtgagttgagtgaaccc |
82 |
Q |
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| T |
19125475 |
agactgaaatgtcgaactcagctgtgatttgggtgccgttaacagttagtgagttgagtgcaccc |
19125539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 19501653 - 19501594
Alignment:
| Q |
25 |
aatgttaaactcggctgtgagttgggtgccgttgacagttagtgagttgagtgaaccctc |
84 |
Q |
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|||||| ||||||||||||||||||||| | | | ||||||||||||||||||||||| |
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| T |
19501653 |
aatgttgaactcggctgtgagttgggtgttgctaatggttagtgagttgagtgaaccctc |
19501594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 46536617 - 46536552
Alignment:
| Q |
17 |
gagaccgaaatgttaaactcggctgtgagttgggtgccgttgacagttagtgagttgagtgaaccc |
82 |
Q |
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||||||||||| || |||| |||||||| |||||||||||| || || |||||||||||||||||| |
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| T |
46536617 |
gagaccgaaatattgaacttggctgtgacttgggtgccgttaactgtaagtgagttgagtgaaccc |
46536552 |
T |
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