View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5368_low_25 (Length: 248)
Name: NF5368_low_25
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 5390523 - 5390758
Alignment:
| Q |
1 |
caaacctcaaactaaacatattgagaaatgtgagaaacatttgctttctaacactctttttaacactcactatcttatcgagggaactcatgtgaatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||| | ||||| ||| ||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
5390523 |
caaacctcaaactaaacatattgagaaatgctagaaacattcgctgtttaacattctctttaacactcactctcttatcg-gggaactcatgtgaatcac |
5390621 |
T |
|
| Q |
101 |
accacttt--gtgatacccaattctaaagtgtgagacccatgtgaatttgatccaataagagagtaaatgttagagatgacattagaaaaaaggtgctca |
198 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5390622 |
accactttaggtgatactcaattctaaagtgtgagacccatatgagtttgatccaatgagagagtaaatgttagagatgacattagaaaaaaggtgctca |
5390721 |
T |
|
| Q |
199 |
gatcatacctcaaatatagttagtggattcttttacg |
235 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
5390722 |
gatcattcctcaaatatagttagtggatacttttacg |
5390758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University