View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_28 (Length: 245)
Name: NF5368_low_28
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 40059531 - 40059766
Alignment:
| Q |
1 |
taataaagtagtttagccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttg |
100 |
Q |
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| T |
40059531 |
taataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttg |
40059630 |
T |
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| Q |
101 |
atgagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaacta |
200 |
Q |
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| T |
40059631 |
atgggaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaacta |
40059730 |
T |
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| Q |
201 |
tgggtaaagtttggttggtaatttatgtgtgatatt |
236 |
Q |
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| T |
40059731 |
tgggtaaagtttggttggtaatttatgtgtgatatt |
40059766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 40077652 - 40077827
Alignment:
| Q |
40 |
taaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtgg |
139 |
Q |
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| T |
40077652 |
taaggttagaaagactattataattcattgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtaaaggcagtgg |
40077751 |
T |
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| Q |
140 |
ctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggt |
215 |
Q |
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| T |
40077752 |
ctgaggcaggactatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaactacgggtaaagtttggt |
40077827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 40085418 - 40085632
Alignment:
| Q |
1 |
taataaagtagtttagccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttg |
100 |
Q |
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|||| ||||| |||| ||||| ||| | |||||||||| |||| | |||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40085418 |
taattaagtattttatccaaatatgatcttgatctactataagctaagaaagtctatcttaattcattgaaatgaaatggatttttgcagtatgattttg |
40085517 |
T |
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| Q |
101 |
atgagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaacta |
200 |
Q |
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| T |
40085518 |
atgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggattggtccatatgtttgttctgaatggaacta |
40085617 |
T |
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| Q |
201 |
tgggtaaagtttggt |
215 |
Q |
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| T |
40085618 |
tgggtaaagtttggt |
40085632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 22015910 - 22015825
Alignment:
| Q |
123 |
atttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaa |
208 |
Q |
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| T |
22015910 |
atttgtgaaggcagtagcagcagcaggtttatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaattacgggtaaa |
22015825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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