View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_29 (Length: 244)
Name: NF5368_low_29
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 2928181 - 2927957
Alignment:
| Q |
1 |
ttttttctgtgctgcatctgctgtgttctaatggtcctttctgtcattcaatgttgtcttctttgttaaatatatgcttatgtttgttctcaacccaatt |
100 |
Q |
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| T |
2928181 |
ttttttctgtgctgcatctgctgtgttctaatggtcctttctgtcattcaatgttgtcttctttgttacatatatgcttatgtttgttctcaacccaatt |
2928082 |
T |
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| Q |
101 |
tattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcctcgggttgctcctaaagtctacga |
200 |
Q |
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| T |
2928081 |
tattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcctcgggtggctcctaaagtctacga |
2927982 |
T |
|
| Q |
201 |
ggagctgggaaagttaagcggacat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
2927981 |
ggagctgggaaagttaagcggacat |
2927957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2311093 - 2311313
Alignment:
| Q |
1 |
ttttttctgtgctgcatctgctgtgttctaatggtcctttctgtcattcaatgttgtcttctttgttaaatatatgcttatgtttgttctcaacccaatt |
100 |
Q |
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| T |
2311093 |
ttttttctgtcctgcatctgctatgatctaatggtcccttctgtcattcaatgttgtctcatt----acatatatgcttatgcttgttctcaacccactt |
2311188 |
T |
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| Q |
101 |
tattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcctcgggttgctcctaaagtctacga |
200 |
Q |
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| T |
2311189 |
tattcacaatttgcatgtttgaatttgaagctgattacatcgggcttcaactaatggcagcagctggctatgatcctcgggtggcacctaaagtctacga |
2311288 |
T |
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| Q |
201 |
ggagctgggaaagttaagcggacat |
225 |
Q |
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| T |
2311289 |
ggagctgggaaagttaagcagacat |
2311313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 10173789 - 10173717
Alignment:
| Q |
104 |
tcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcc |
176 |
Q |
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||||||||| || || |||||||||||| ||||| || |||||||||||||||||||| |||||||||||||| |
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| T |
10173789 |
tcacaatttacaagtgtgaatttgaagcggattacattgggcttctactaatggcagccgctggctatgatcc |
10173717 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 1238024 - 1237932
Alignment:
| Q |
84 |
ttgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcc |
176 |
Q |
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| T |
1238024 |
ttgttctcaatccaatttattcacaatttgcaggtttgaatttgaagcggattacattgggcttctactaatggcagcagttggctatgatcc |
1237932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 29088974 - 29088860
Alignment:
| Q |
66 |
ttaaatatatgcttatgtttgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagct |
165 |
Q |
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|||||||||| || ||| || ||||||| ||||| |||||||||||||||| ||||||||||||| |||||| || |||||||||||||||||| ||||| |
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| T |
29088974 |
ttaaatatatactcatgcttattctcaatccaatgtattcacaatttgcagttttgaatttgaagttgattacattgggcttctactaatggcatcagct |
29088875 |
T |
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| Q |
166 |
ggctatgatcctcgg |
180 |
Q |
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| T |
29088874 |
ggctatgatcctcgg |
29088860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 1175417 - 1175509
Alignment:
| Q |
84 |
ttgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcc |
176 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
1175417 |
ttgttctcaacaaaatttattcacaatttgcaggtttgaatatgaagctgattacattgggcttctactgatggcagcagctggctatgatcc |
1175509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 794442 - 794359
Alignment:
| Q |
80 |
atgtttgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcag |
163 |
Q |
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| T |
794442 |
atgtttgttctcaatccaatatattcataatttgaaggtttgaatttgaatacgattacattgggcttatactaatcgcagcag |
794359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 23906529 - 23906457
Alignment:
| Q |
125 |
ttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcctcgggttgctcctaaagtcta |
197 |
Q |
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||||||||||||| || |||||||| || | ||| | |||||||||||||| ||||| || ||||||||||| |
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| T |
23906529 |
ttgaagctgattacattcggcttctattacttgcatcggctggctatgatccccgggtggcacctaaagtcta |
23906457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 43286845 - 43286724
Alignment:
| Q |
85 |
tgttctcaacccaatttatt-cacaatttgcaggtttgaatttgaagctgatta--------tatcgggcttctactaatggcagcagctggctatgatc |
175 |
Q |
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|||||||||||||||||||| || |||||| ||| ||||||||||||||||||| ||| |||||||||||||| || | ||||||||||||| |
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| T |
43286845 |
tgttctcaacccaatttatttcataatttgtaggattgaatttgaagctgattacattgggcaatctggcttctactaatgacatcggctggctatgatc |
43286746 |
T |
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| Q |
176 |
ctcgggttgctcctaaagtcta |
197 |
Q |
| |
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| T |
43286745 |
cccgacttgcacctaaagtcta |
43286724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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