View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_31 (Length: 244)
Name: NF5368_low_31
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 56232350 - 56232119
Alignment:
| Q |
1 |
tgaggtgaaagaaagaaaatgaaactacgactaactcgtgtaatttggaaaatactaagttaggaaacaaaatatgcagcatgatttatgacgcaatgtt |
100 |
Q |
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| T |
56232350 |
tgaggtgaaagaaagaaaatgaaactacgaccaactcgtgtaatttggaaaatactaagttaggaaacaaaatatgtagtatgatttatgacgcaatgtt |
56232251 |
T |
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| Q |
101 |
tgaaattaataatgaaagaatag----accttgaggatctctggtgtgattgggttaggccctctagaggagaaagccgccatgcttggagcaggtttta |
196 |
Q |
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| T |
56232250 |
tgaaattaataatgaaagaataggcaaaccttgaggatctctggtgtgattgggttaggccctctagaggagaaagccgccatgcttggagcaggtttta |
56232151 |
T |
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| Q |
197 |
tgttcaactttgttgtgggtggatgaatatat |
228 |
Q |
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| T |
56232150 |
tgttcaactttgttgtgggtggatgaatatat |
56232119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 39190098 - 39189909
Alignment:
| Q |
42 |
aatttggaaaatactaagttaggaaacaaaatatgcagcatgatttatgacgcaatgtttgaaattaataatgaaagaatag----accttgaggatctc |
137 |
Q |
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| T |
39190098 |
aatttggaaaataccatgttaggaaataaaatatgtagtatgatttgtgacaca-tgtttgaaattaataatgaaagaataggcaaaccttgaggatctc |
39190000 |
T |
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| Q |
138 |
tggtgtgattgggttaggccctctagaggagaaagccgccatgcttggagcaggttttatgttcaactttgttgtgggtggatgaatatat |
228 |
Q |
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| T |
39189999 |
tggtgtgattgtgttaggccctctagaggagaagaccgccatgcttggagcaggttttattttcaactttgttgtgggtggatgaatatat |
39189909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 39218836 - 39218756
Alignment:
| Q |
45 |
ttggaaaatactaagttaggaaacaaaatatgcagcatgatttatgacgcaatgtttgaaattaataatgaaagaatagac |
125 |
Q |
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||||||||||||| ||||||||| |||||||| || ||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
39218836 |
ttggaaaatactatgttaggaaataaaatatgtagtatgatttgtgacacaatgtttgaaattaataatgaaagaatagac |
39218756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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