View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_34 (Length: 239)
Name: NF5368_low_34
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 2745486 - 2745701
Alignment:
| Q |
16 |
attacctcttaatcctttcttctttgccttttgtgcccaaccaagaagacatgtttgtatttgctcatcaaatatggcattcttatagtaagttcccatc |
115 |
Q |
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| T |
2745486 |
attacctcttaatcctttcttctttgccttttgtgcccaaccaagaagacatgtttgtatttgctcatcaaatatggctttcttatagtaagttcccatc |
2745585 |
T |
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| Q |
116 |
tacattgtgtgaaaaattatcaatgtcaatgacga-nnnnnnngtattaattttgtactcaaatacacttttgatacatctattcttgccgattcattat |
214 |
Q |
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| T |
2745586 |
tacattgtgtaaaaaattatcaatgtcaatgacgattttttttgtattaattttgtactcaaatacacttttgatacatctattcttgccgattcattat |
2745685 |
T |
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| Q |
215 |
tttagtttagaataat |
230 |
Q |
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||||||||||| |||| |
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| T |
2745686 |
tttagtttagagtaat |
2745701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 2753982 - 2754107
Alignment:
| Q |
19 |
acctcttaatcctttcttctttgccttttgtgcccaaccaagaagacatgtttgtatttgctcatcaaatatggcattcttatagtaagttcccatctac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| ||| || || ||||||| ||||| ||| ||||||||||||| |
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| T |
2753982 |
acctcttaatcctttcttctttgccttttgtgcccaaccaataagtcgtgtttgtacttgatcgtcgaatatggatctcttaaagtgagttcccatctac |
2754081 |
T |
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| Q |
119 |
attgtgtgaaaaattatcaatgtcaa |
144 |
Q |
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||||||| |||||||||||||||||| |
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| T |
2754082 |
attgtgtaaaaaattatcaatgtcaa |
2754107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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