View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_37 (Length: 236)
Name: NF5368_low_37
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_37 |
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| [»] scaffold1457 (1 HSPs) |
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| [»] scaffold0263 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold1457 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold1457
Description:
Target: scaffold1457; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 651 - 770
Alignment:
| Q |
1 |
tccactatctctatgtttaattattcgggtcatttatcaaactaaggaattgctaggtcgttccttgctgtagtttgatacatcttctaaataagaccca |
100 |
Q |
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| T |
651 |
tccactatctatatgtttaattattcgggtcatttatcaaactaagggatagctatgtcgttccttgctgtagtttgatacatcttctaaataagaccca |
750 |
T |
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| Q |
101 |
aaaaagctttgattattgca |
120 |
Q |
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|||||||||||||||||||| |
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| T |
751 |
aaaaagctttgattattgca |
770 |
T |
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Target: scaffold0263 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 14527 - 14347
Alignment:
| Q |
1 |
tccactatctctatgtttaattattcgggtcatttatcaaactaaggaattgctaggtcgttccttgctgtagtttg--atacatcttctaaataagacc |
98 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14527 |
tccactatctatatgtttaattattcgggtcatttatcaaactaagggatggctatgacgttccttgctgtagtttgatatacatcttctaaataagacc |
14428 |
T |
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| Q |
99 |
caaaaaagctttgattattgcannnnnnnnnnnnnnnnnncgcacaggttagttacttgtgctatgtacgttgttttaata |
179 |
Q |
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| T |
14427 |
caaaaaaactttaattattgcatgtgtgtgttttgtgtgtcgcacaggttagttacttgtgctatgtacgttgttttaata |
14347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 92692 - 92600
Alignment:
| Q |
1 |
tccactatctctatgtttaattattcgggtcatttatcaaactaaggaattgctaggtcgttccttgctgtagtttg--atacatcttctaaa |
91 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||| |||||||||||||| |
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| T |
92692 |
tccactatctatatgtttaattattcgggtcatttatcaaactaagggatggctatgacgttccttgctgtagtttgatatacatcttctaaa |
92600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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