View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_4 (Length: 399)
Name: NF5368_low_4
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 88 - 391
Target Start/End: Complemental strand, 40546899 - 40546596
Alignment:
| Q |
88 |
catactcaagtccctaatcttacactattggtgatcatctctccctaatccaacaaaacctctatcaaggataaagaaatatattatcagcctgcaacac |
187 |
Q |
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| T |
40546899 |
catactcaagtccctaatcttacactattggtgatcatctatccctaatccaacaaaacctctatcaaggataaagaaatatattatcagcctgcaacat |
40546800 |
T |
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| Q |
188 |
aagatcacaaatactagtagaaatttgaaagcctgaatagtagatctggtgtgaatatgtctgcacccacacccaaatagaaattttcactacatactag |
287 |
Q |
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| T |
40546799 |
aagatcacaaatactagtagaaatttgaaagcctgaatagtagatttggtgtgaatatgtctgcacccacacccaaatagaaattttcactacatactag |
40546700 |
T |
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| Q |
288 |
attttagtattgctcaattaagcacatcaatataacagcaacaccaataggctcaaaacttttatttaatacttcatatatatcttcaatttgcatttga |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40546699 |
attttagtattgctcaattaagcacatcaatataacagcaacaccaataggctcaaaatttttatttaatacttcatatatatcttcaatttgcatttgt |
40546600 |
T |
|
| Q |
388 |
tgat |
391 |
Q |
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|||| |
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| T |
40546599 |
tgat |
40546596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 40547085 - 40547019
Alignment:
| Q |
17 |
catagtcaacctgtgaaaatgtatgaaaatgaatatacacaaacacaaacatttgtacatgtcaaaa |
83 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40547085 |
catagtcaacgtgtgaaaatgtatgaaaatgaatatacacaaacacaaacatttgtacatgtcaaaa |
40547019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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