View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5368_low_41 (Length: 216)
Name: NF5368_low_41
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_41 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 45625587 - 45625767
Alignment:
| Q |
20 |
atctttctatgaatggattggcaggagagtatgaaactaagagtagaggaaagagacatactagtgatgccagagcattgggagaaggcatataccgcat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45625587 |
atctttctatgaatggattggcaggagagtatgaaactaagagtagaggaaagagacatactagtgatgccagagcattgggagaaggcatataccgcat |
45625686 |
T |
|
| Q |
120 |
tttaaggcacaaagcagagagtgggaaaagaagccacacccatttaatctacaagttagaatttccaggtgaagatgagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45625687 |
tttaaggcacaaagcagagagtgggaaaagaagccacacccatttaatctacaagttagaatttccaggtgaagatgagaa |
45625767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University