View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_42 (Length: 210)
Name: NF5368_low_42
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 10065984 - 10065806
Alignment:
| Q |
14 |
aagaatatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatctttgcttagatttacttaaaaa |
113 |
Q |
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| T |
10065984 |
aagaaaatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatctttgcttagatttacttaaaaa |
10065885 |
T |
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| Q |
114 |
agtgtgtaacatacagagtaatctcatctttcacttgattttttctttgactacttaactatacttgtttacatgtgat |
192 |
Q |
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| T |
10065884 |
agtgtgtatcatacagagtaatctcatctttcacttgattttttctttaactacttaactatacttgtttacatgtgat |
10065806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 48465884 - 48465987
Alignment:
| Q |
14 |
aagaatatcgaggcgttgaagaagagaaactaatttgcaacctccctaaagatctgagaagagacataaggagacatctttgcttagatttacttaaaaa |
113 |
Q |
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||||| || |||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| | | ||||||||||||| |||| | ||||| |
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| T |
48465884 |
aagaaaatagaggtgttgaagaagagactttaattcacaacctccctaaagatctcagaagagacataaagcgtcatctttgcttagctttagtaaaaaa |
48465983 |
T |
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| Q |
114 |
agtg |
117 |
Q |
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|||| |
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| T |
48465984 |
agtg |
48465987 |
T |
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