View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_7 (Length: 368)
Name: NF5368_low_7
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 46754978 - 46754752
Alignment:
| Q |
18 |
acaatttcaataccaactttcatttccgtttagagaataaatgcattgtttttactattttgataaggttatatatgtgtagttatcaacctaaaatatt |
117 |
Q |
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| T |
46754978 |
acaatttcaataccaactttcatttccgtttagagaataaatgcattgtttttactattttgataaggttatatatgtatagttatcaacctaaaatatt |
46754879 |
T |
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| Q |
118 |
tgtcctaaccgtcaacctcatacagctatgccgggaaagattatcgatgttgtgtacacgaaaataaactgagaaaaaagaatggaaaattattgtagac |
217 |
Q |
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| T |
46754878 |
tgtcctaaccgtcaacctcatacagctatgccgggaaagattatcgatgttgtgtacacgaaaataaactgagaaaaaagaatggaaaattgttgtagac |
46754779 |
T |
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| Q |
218 |
aaccattggttacacaatcaaggggcc |
244 |
Q |
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| T |
46754778 |
aaccattggttacacaatcaaggggcc |
46754752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 46754709 - 46754638
Alignment:
| Q |
287 |
tatacacaacatacacaagtcaaagcacctgtctagcaaattgttagccatctaatgatttactctcctatg |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46754709 |
tatacacaacatacacaagtcaaagcacctgtctagcaaattgttagccatctactgatttactctcctatg |
46754638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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