View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5368_low_9 (Length: 342)
Name: NF5368_low_9
Description: NF5368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5368_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 34 - 323
Target Start/End: Complemental strand, 39615200 - 39614911
Alignment:
| Q |
34 |
attattctctatacgttgtgtaaatttatatctatttttatttatttatgcagacataacatctcaaacgtgtcaactttcatgaaaacctgaaatagtt |
133 |
Q |
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| T |
39615200 |
attattctctatacgttgtgtaaatttatatctatttttatttatttatgcagacataacatctcaaacgtgtcaactttcatgaaaacctgaaatagtt |
39615101 |
T |
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| Q |
134 |
gcaagaaaatcaccagtttcatatgcaggagtgccactagctgaaacttcaatagcagtagaaggaagaagtacaaaatgttttatattatgttgctttt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39615100 |
gcaagaaaatcaccagtttcatatgcaggagtgccactagctgaaacttcaatagcagtagaaggaagaagtgcaaaatgttttatattatgttgctttt |
39615001 |
T |
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| Q |
234 |
aacaatttgactatgacaccttaggcgactctacattattttccttgatcatgttggtcctttttaatctttaagttttgatgttcaact |
323 |
Q |
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| T |
39615000 |
aacaatttgactatgacaccttaggtgactctacattattttccttgatcatgttggtcctttttaatctttaagttttgatgttcaact |
39614911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 8152518 - 8152679
Alignment:
| Q |
34 |
attattctctatacgttgtgtaaatttatatctatttttatttatttatgcagacataacatctcaaacgtgtcaactttcatgaaaacctgaaatagtt |
133 |
Q |
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| T |
8152518 |
attattctctatacgttgtgaaaatttatatc-------attt-tttatgcagacataacatcttaaacgtgccaacttccatgaagacctgaaatagtt |
8152609 |
T |
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| Q |
134 |
gcaagaaaatcaccagtttcatatgcaggagtgccactagctgaaacttcaatagcagtagaaggaagaa |
203 |
Q |
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| T |
8152610 |
ggaagaaaatcaccagtttcatatgcaggagtgccactagcagtagcttcaataccagtagcaggaagaa |
8152679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 207 - 313
Target Start/End: Original strand, 1588278 - 1588382
Alignment:
| Q |
207 |
caaaatgttttatattatgttgcttttaacaatttgactatgacaccttaggcgactctacattattttccttgatcatgttggtcctttttaatcttta |
306 |
Q |
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|||||||||||||| |||||||||||||| ||||||||| |||||||||| | |||| | |||||| |||||||||||||||||||||||||||||||| |
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| T |
1588278 |
caaaatgttttatagtatgttgcttttaaaaatttgactctgacaccttaagggact--agattattctccttgatcatgttggtcctttttaatcttta |
1588375 |
T |
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| Q |
307 |
agttttg |
313 |
Q |
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||||||| |
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| T |
1588376 |
agttttg |
1588382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 1588159 - 1588238
Alignment:
| Q |
78 |
tttatgcagacataacatctcaaacgtgtcaactttc---atgaaaacctgaaatagttgcaagaaaatcaccagtttca |
154 |
Q |
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||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |
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| T |
1588159 |
tttatgcagacataaaatctcaaacatgtcaactttcatgatgaagacctgaaataattgcaagaaaatcaccagtttca |
1588238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 19268867 - 19268789
Alignment:
| Q |
78 |
tttatgcagacataacatctcaaacgtgtcaactttc---atgaaaacctgaaatagttgcaagaaaatcaccagtttc |
153 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||||||||| |
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| T |
19268867 |
tttatgcaggcataacatctcaaacgtgtcaactttcattatgaagacctaaaatagttgcaagaaaattaccagtttc |
19268789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 19268331 - 19268259
Alignment:
| Q |
239 |
tttgactatgacaccttaggcgactctacattattttccttgatcatgttggtcctttttaatctttaagttttg |
313 |
Q |
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|||||||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19268331 |
tttgactatgacaccttaaatgact--agattattctccttgatcatgttggtcctttttaatctttaagttttg |
19268259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 33138205 - 33138259
Alignment:
| Q |
264 |
ctacattattttccttgatcatgttggtcctttttaatctttaagttttgatgtt |
318 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33138205 |
ctacattattgcacttgatcatgttggtcctttttaatctttaagtttttatgtt |
33138259 |
T |
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