View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5369-Insertion-1 (Length: 740)
Name: NF5369-Insertion-1
Description: NF5369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5369-Insertion-1 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 614; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 7 - 740
Target Start/End: Complemental strand, 7578888 - 7578161
Alignment:
| Q |
7 |
ataaaataacgatttattattcttgtgatttaatttacatcaatcactgagtttcctaaatattttaccattatagctatgggtgtttgatccacaaatg |
106 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7578888 |
ataaaataacgatttattattcttgtgatttaatt-acatcaatcactgagtttcctaaatattttaccattatagctatgggtgtttgatccacaaatg |
7578790 |
T |
|
| Q |
107 |
tttgattgtaaaacaaaatacacacacacttattgataagttattaatgaatagatgctaaataaaattctttacctctctcccactcaagtggttgttg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7578789 |
tttgattgtaaaacaaaatacacacacacttattgataagttattaatgaataaatgctaaataaaattctttacctctctcccactcaagtggttgttg |
7578690 |
T |
|
| Q |
207 |
agctatatcaacgatgaattgttcagaagaactgagttcgatttatgaaaagaacaaatttttatcagactttacgtacttagagcaactacaacgatgt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| | | |
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| T |
7578689 |
agctatatcaacgatgaattgttcagaagaactgagttcgatttatgaaaagaacaattttttatcagacattacgtacttagagcaactacaacgcttt |
7578590 |
T |
|
| Q |
307 |
gttctacaaatttaaggacactcaaaatctgttcttgttattttttcagcattggagaacatccacatgtcatccaaggtggagaatggttgcgccacaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7578589 |
gttctacaaatttaaggacactcaaaatctgttcttgttattttttcagcattggagaacatccacatgtcatccaaggtggagaatggttgcaccacaa |
7578490 |
T |
|
| Q |
407 |
gaacatgttctacataacaaaaagttgtgcatttgtactgaacagcagaacataaaaagccaaagcacaaatgcaaagaaagtcacatatatattattat |
506 |
Q |
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| T |
7578489 |
gaacatgttctacataacaaaaagttgcgcatttgtactgaacagtagaacataaaaagccaaagcacaaatgcaaagaaagtcacatatatattattat |
7578390 |
T |
|
| Q |
507 |
taaaaatatgtggggtcaattataggtccatataatataagttaagaacacaaatattgttctttgcattggagtattggagtaaaaatagaagaatgtt |
606 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7578389 |
taaaaatatgtgaggtcaattataggtccatataatataagttaagaatataaatattgttctttgcattgg--------agtaaaaatagaagaatgtt |
7578298 |
T |
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| Q |
607 |
cttaatacatatgtggcatctatggaccccaccaaaatgcttcaagaacacaaatattattctttctccgagaatcagagagtgaacacaaaaaagaagg |
706 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |||||||||||| ||| |
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| T |
7578297 |
cttaatacatacgtggcatttatggaccccaccaaaatgcttcaagaacacaaatattattctttcttcgagaacctgagagttaacacaaaaaagtagg |
7578198 |
T |
|
| Q |
707 |
---tcttggttcaaattagaccattcacatccggtga |
740 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
7578197 |
tcttcttggttcaaattagaccattcacatccggtga |
7578161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 324 - 430
Target Start/End: Complemental strand, 190737 - 190632
Alignment:
| Q |
324 |
acactcaaaatctgttcttgttattttttcagcattggagaacatccacatgtcatccaaggtggagaatggttgcgccacaagaacatgttctacataa |
423 |
Q |
| |
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|||| ||||| ||||| ||| |||||||| ||||||||||||||||||| |||||| |||||||||||| ||||| ||| |||||| ||||||||||| |
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| T |
190737 |
acacccaaaaactgtttttgatatttttt-agcattggagaacatccacttgtcattcaaggtggagaacggttgtaccataagaactggttctacataa |
190639 |
T |
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| Q |
424 |
caaaaag |
430 |
Q |
| |
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||||||| |
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| T |
190638 |
caaaaag |
190632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 339 - 430
Target Start/End: Original strand, 3812247 - 3812337
Alignment:
| Q |
339 |
tcttgttattttttcagcattggagaacatccacatgtcatccaaggtggagaatggttgcgccacaagaacatgttctacataacaaaaag |
430 |
Q |
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||||||||| |||| ||||||||||||||||||| |||||| ||||||||||| |||||| |||||||||| ||||||||||| ||||| |
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| T |
3812247 |
tcttgttatgtttt-agcattggagaacatccacttgtcatttaaggtggagaacggttgcaccacaagaaccaattctacataaccaaaag |
3812337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 507 - 669
Target Start/End: Original strand, 10866787 - 10866941
Alignment:
| Q |
507 |
taaaaatatgtggggtcaattataggtccatataatataagttaagaacacaaatattgttctttgcattggagtattggagtaaaaatagaagaatgtt |
606 |
Q |
| |
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||||||||||||||||||||| |||| || |||||| |||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |
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| T |
10866787 |
taaaaatatgtggggtcaattgtaggaccctataatgtaagttaagaacacaaatattgttctttgc--------attgaagtaaaaatgaaagaatgtt |
10866878 |
T |
|
| Q |
607 |
cttaatacatatgtggcatctatggaccccaccaaaatgcttcaagaacacaaatattattct |
669 |
Q |
| |
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||||||||||||||| ||||| | |||||||||||||||||||||||||| ||||||| |||| |
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| T |
10866879 |
cttaatacatatgtgacatctttagaccccaccaaaatgcttcaagaacataaatattgttct |
10866941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 663
Target Start/End: Complemental strand, 53752595 - 53752474
Alignment:
| Q |
537 |
tataatataagttaagaacacaaatattgttctttgcattggagtattggagtaaaaatagaagaatgttcttaatacatatgtggcatc---tatggac |
633 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||||||| ||||||||| || ||||| ||||||||||||||||| | | || || |
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| T |
53752595 |
tataatgtaagttaagaacataaatattgttctttgcattgg--------agtaaaaatgaaaagatgtttttaatacatatgtggcagcagttttgaac |
53752504 |
T |
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| Q |
634 |
cccaccaaaatgcttcaagaacacaaatat |
663 |
Q |
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||||||||||||||| ||||| |||||||| |
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| T |
53752503 |
cccaccaaaatgcttgaagaatacaaatat |
53752474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 41788559 - 41788604
Alignment:
| Q |
537 |
tataatataagttaagaacacaaatattgttctttgcattggagta |
582 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||||||||| |||| |
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| T |
41788559 |
tataatgtaagttaagaacataaatattgttctttgcattgaagta |
41788604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 511 - 662
Target Start/End: Original strand, 21491275 - 21491418
Alignment:
| Q |
511 |
aatatgtggggtcaattataggtccatataatataagttaagaacacaaatattgttctttgcattggagtattggagtaaaaatagaagaatgttctta |
610 |
Q |
| |
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||||||| | ||||||| |||| | |||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
21491275 |
aatatgtagagtcaattgtaggactctataatgtaagttaagaacacaaatattgttctttgcattg--------gagtaaaaattgaagaatgttctta |
21491366 |
T |
|
| Q |
611 |
atacatatgtggcatctatggaccccaccaaaatgcttcaagaacacaaata |
662 |
Q |
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||||||| ||||||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
21491367 |
atacatacgtggcatctttggaccccaccaaaatacttaaagaacacaaata |
21491418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 510 - 662
Target Start/End: Original strand, 34871730 - 34871874
Alignment:
| Q |
510 |
aaatatgtggggtcaattataggtccatataatataagttaagaacacaaatattgttctttgcattggagtattggagtaaaaatagaagaatgttctt |
609 |
Q |
| |
|
||||| |||||||||||| |||| || |||||| ||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| || |
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| T |
34871730 |
aaatacgtggggtcaattgtaggaccctataatgtaagttaagaacataaatattgttctttgc--------attggagtaaaaatggaagaatgttgtt |
34871821 |
T |
|
| Q |
610 |
aatacatatgtggcatctatggaccccaccaaaatgcttcaagaacacaaata |
662 |
Q |
| |
|
|||| ||||||||||| | | |||||||||||||| |||||| |||| ||||| |
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| T |
34871822 |
aatatatatgtggcatttttagaccccaccaaaatacttcaaaaacataaata |
34871874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 330 - 424
Target Start/End: Complemental strand, 21183818 - 21183725
Alignment:
| Q |
330 |
aaaatctgttcttgttattttttcagcattggagaacatccacatgtcatccaaggtggagaatggttgcgccacaagaacatgttctacataac |
424 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||| |
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| T |
21183818 |
aaaaactgttcttgttatttttt-agcattggagaacatccacttgtcatccaaggtggagaacggttgcaccacaagaaccggttctacataac |
21183725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 507 - 663
Target Start/End: Complemental strand, 21257009 - 21256861
Alignment:
| Q |
507 |
taaaaatatgtggggtcaattataggtccatataatataagttaagaacacaaatattgttctttgcattggagtattggagtaaaaatagaagaatgtt |
606 |
Q |
| |
|
||||||||||||||| ||||| ||| || |||||| ||||||||||||| ||||||||||||||| ||||||||||||||| || ||||| |
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| T |
21257009 |
taaaaatatgtggggccaattgaaggaccttataatgtaagttaagaacataaatattgttctttg--------tattggagtaaaaatgaaaagatgtt |
21256918 |
T |
|
| Q |
607 |
cttaatacatatgtggcatctatggaccccaccaaaatgcttcaagaacacaaatat |
663 |
Q |
| |
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|||||||||||||||||| || |||||| ||||||||||||||||||||| |||||| |
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|
| T |
21256917 |
cttaatacatatgtggcagctttggacctcaccaaaatgcttcaagaacataaatat |
21256861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 587 - 669
Target Start/End: Original strand, 45669530 - 45669612
Alignment:
| Q |
587 |
agtaaaaatagaagaatgttcttaatacatatgtggcatctatggaccccaccaaaatgcttcaagaacacaaatattattct |
669 |
Q |
| |
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||||||||| ||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |
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| T |
45669530 |
agtaaaaatggaaaaatgttcttaatatatatgtggcatctttggattccaccaaaatgcttcaagaacacaaatattgttct |
45669612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 507 - 579
Target Start/End: Original strand, 29735062 - 29735134
Alignment:
| Q |
507 |
taaaaatatgtggggtcaattataggtccatataatataagttaagaacacaaatattgttctttgcattgga |
579 |
Q |
| |
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|||||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
29735062 |
taaaaatatgtgaggtcaattgtaggaccatataatgtaagttaagaacacaaatattgtactttgcattgga |
29735134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 324 - 419
Target Start/End: Complemental strand, 28846731 - 28846637
Alignment:
| Q |
324 |
acactcaaaatctgttcttgttattttttcagcattggagaacatccacatgtcatccaaggtggagaatggttgcgccacaagaacatgttctac |
419 |
Q |
| |
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|||| ||||| ||||||||||||||||||| |||| ||||||||||||| || |||||||||||||||||||||| |||||||||| ||||||| |
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| T |
28846731 |
acacccaaaaactgttcttgttattttttc-gcatcggagaacatccacttggtatccaaggtggagaatggttgcaccacaagaactggttctac |
28846637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 336 - 430
Target Start/End: Complemental strand, 37731272 - 37731179
Alignment:
| Q |
336 |
tgttcttgttattttttcagcattggagaacatccacatgtcatccaaggtggagaatggttgcgccacaagaacatgttctacataacaaaaag |
430 |
Q |
| |
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||||||||||||||||| || || ||||||||||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||| ||||| |
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| T |
37731272 |
tgttcttgttatttttt-agtatcggagaacatccacttgtcatccaaggtggagaacagttgcaccacaagaaccggttctacataaccaaaag |
37731179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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