View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5369-Insertion-2 (Length: 1061)
Name: NF5369-Insertion-2
Description: NF5369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5369-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 885; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 885; E-Value: 0
Query Start/End: Original strand, 8 - 1006
Target Start/End: Original strand, 1759168 - 1760185
Alignment:
| Q |
8 |
actgttgctttgattttgtactgaatctgttgactgaatcactttgatttttgagttgaactttggttaatcaatgcgatatctgtgccaatttttgatt |
107 |
Q |
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| T |
1759168 |
actgttgctttgattttgtactgaatctgttgactgaatcactttgatttttgagttgaactttggttaatcaatgcgatatctgtgccaatttttgatt |
1759267 |
T |
|
| Q |
108 |
tattttctgcattttgaatcgaattattgtaatattaggatttatgattgaaatgtaaaggtttttgttcttgaagattttgatagtttactgcaacaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1759268 |
tattttctgcattttgaatcgaattattgtaatattaggatttatgattgaaatgtaaaggtttttattcttgaagattttgatagtttactgcaacaca |
1759367 |
T |
|
| Q |
208 |
tgctgagatcttgctgctaagttttgtaattgtatagtactgattatattaattttgttag-----------gagttttagttatgttacttagttgctt |
296 |
Q |
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| T |
1759368 |
tgctgagatcttgctgctaagttttgtaattgtatagtactgattatattaattttgttagaattttgttaggagttttagttatgttacttagttgctt |
1759467 |
T |
|
| Q |
297 |
tgattttgtactgaatctgttaatttttgctaatgtgatcaattcactttgattcttgagttgaaattattgttaatcatgtgtaataatgcatgtaatt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1759468 |
tgattttgtactgaatctgttaatttttgctaatgtgatcaattcactttgattcttgagttgatattattgttaatcatgtgtaataatgcatgtaatt |
1759567 |
T |
|
| Q |
397 |
ttgcttcattatttttgtttcttgagacttgtgtgcagtgatttgaagtgtgtctggttttagtgttgtgtttgaagtcgaagttcagttctaagattgg |
496 |
Q |
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| T |
1759568 |
ttgcttcattatttttgtttcttgagacttgtgtgcagtgatttgaagtgtgtctggttttagtgttgtgtttgaagtcaaagttcagttctaagattgg |
1759667 |
T |
|
| Q |
497 |
aattgacttttgttgcaatcattgattttcttggaagtttcgatatatgtg--tgtttgtgtttgtggtatcttagatttagaactacgaaattaaagca |
594 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1759668 |
aattgacttttgttgcaatcattgattttcttggaagtttcgatatatgtgtgtgtttgtgtttgtggtatcttagatttagaactacaaaattaaagca |
1759767 |
T |
|
| Q |
595 |
atggtagtgtaattgtgatttggtgagatatggaaaaccatgagcgagtatagcattttttgttctgtggcttgtaaaagttattttcatgactgttact |
694 |
Q |
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| T |
1759768 |
atggtagtgtaattgtgatttggtgagatatggaaaaccatgagcgagtatagcattttttgttctgtggcttgtaaaagttattttcatgactgttaat |
1759867 |
T |
|
| Q |
695 |
ttgtttttaagttcaaattttgacttaagagtgttgtatttgaagtggaagttcagttctaaggttggaattgccttatgcagtagttgtttttcttgga |
794 |
Q |
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| T |
1759868 |
ttgtttttaagttcaaattttgacttaagagtgttgtatttgaagtggaagttcagttctaaggttggaattggcttttgcagtagttgtttttcttgga |
1759967 |
T |
|
| Q |
795 |
aattcaatataaacgtgtgtctgtgtttgtgatgactcgaattgagaactaggaaataagaacattggtgctgt-attgtaatttgaagagatattggaa |
893 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1759968 |
aattcaatattaacgtgtgtctgtgtttgtgatgactcgaattgagaactaggaaataagaacattggtgctgtaattgtaatttgaagagatattggaa |
1760067 |
T |
|
| Q |
894 |
accataagtg-ttagaactttaaataa-ttttttgccctatggtgttaa-ttttggtttttcgatgattgcttc-ttgttgttgaattcaga-tatgact |
988 |
Q |
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| T |
1760068 |
accataagtgtttagaactttaaataatttttttgccctatggtgttaatttttgttttttcgatgattgcttctttgttgttgaattcagattatgact |
1760167 |
T |
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| Q |
989 |
tgagagttttgtttttgt |
1006 |
Q |
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| T |
1760168 |
tgagagttttgtttttgt |
1760185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 603 - 673
Target Start/End: Complemental strand, 694871 - 694801
Alignment:
| Q |
603 |
gtaattgtgatttggtgagatatggaaaaccatgagcgagtatagcattttttgttctgtggcttgtaaaa |
673 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||||| || ||| |||||| |||||||||||||| |
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| T |
694871 |
gtaattatgatttggtgagatatggaaaaccatgagtgagtagagtattgtttgttgtgtggcttgtaaaa |
694801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 603 - 673
Target Start/End: Original strand, 23274086 - 23274156
Alignment:
| Q |
603 |
gtaattgtgatttggtgagatatggaaaaccatgagcgagtatagcattttttgttctgtggcttgtaaaa |
673 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||| ||||| || ||| |||||| |||||||||||||| |
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| T |
23274086 |
gtaattatgatttggtgagatatggaaaaccaggagtgagtagagtattgtttgttttgtggcttgtaaaa |
23274156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 1758984 - 1759028
Alignment:
| Q |
343 |
ctttgattcttgagttgaaattattgttaatcatgtgtaataatgc |
388 |
Q |
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| T |
1758984 |
ctttgatttttgagttgaaattattcttaatcatgt-taataatgc |
1759028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 434 - 561
Target Start/End: Original strand, 25120784 - 25120909
Alignment:
| Q |
434 |
gtgatttgaagtgtgtctggttttagtgttgtgtttgaagtcgaagttcagttctaagattggaattgacttttgttgcaatcattgattttcttggaag |
533 |
Q |
| |
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| T |
25120784 |
gtgatttgaagtgtatatggtcttagtgttgtgtttgaagtggaattttagttttaattttggtat-gagtttt-ttgcaattattggttttcttggaag |
25120881 |
T |
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| Q |
534 |
tttcgatatatgtgtgtttgtgtttgtg |
561 |
Q |
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| T |
25120882 |
ctttgatatatgtgtgtttgtgtctgtg |
25120909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 603 - 673
Target Start/End: Original strand, 43221881 - 43221951
Alignment:
| Q |
603 |
gtaattgtgatttggtgagatatggaaaaccatgagcgagtatagcattttttgttctgtggcttgtaaaa |
673 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||||| || ||| |||||| |||||||||||||| |
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| T |
43221881 |
gtaattatgatttggtgagatatggaaaaccatgagtgagtagagtattgtttgttgtgtggcttgtaaaa |
43221951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 610 - 673
Target Start/End: Original strand, 39725486 - 39725549
Alignment:
| Q |
610 |
tgatttggtgagatatggaaaaccatgagcgagtatagcattttttgttctgtggcttgtaaaa |
673 |
Q |
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||||||||||||||||||||||||||||| ||||| || ||| |||||| |||||||||||||| |
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| T |
39725486 |
tgatttggtgagatatggaaaaccatgagtgagtagagtattgtttgttgtgtggcttgtaaaa |
39725549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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