View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5369-Insertion-3 (Length: 1021)
Name: NF5369-Insertion-3
Description: NF5369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5369-Insertion-3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 633; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 7 - 651
Target Start/End: Original strand, 25527175 - 25527819
Alignment:
| Q |
7 |
acttataacactccatggcgtccttatctcttccttgcttaagaaaccaattcatgtaagtggcactcacaacaccatggtggtaatatggacaccttat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527175 |
acttataacactccatggcgtccttatctcttccttgcttaagaaaccaattcatgtaagtggcactcacaacaccatggtggtaatatggacaccttat |
25527274 |
T |
|
| Q |
107 |
cttaagctcatcaataaactcattagccttatccaaatttcccagttgagaacaagccaatgtcagattattatacaccgaggaatcggtatgacccgag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527275 |
cttaagctcatcaataaactcattagccttatccaaatttcccagttgagaacaagccaatgtcagattattatacaccgaggaatcggtatgacccgag |
25527374 |
T |
|
| Q |
207 |
tctaataacatctcaaaccaaatgtcactggcgtcctcaatacgaccagcattgatcatacatttggtgataatctgataggtaaccagtgagggtttga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25527375 |
tctaataacatctcaaaccaaatgtcactggcgtcctcaatacgaccagcattgatcatacatttggtgataatctgataggtaaccagtgagggtttga |
25527474 |
T |
|
| Q |
307 |
tagatgcatcagccttcattttccgaaaaacatcgagggccgcatcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgtt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25527475 |
tagatgcatcagccttcattttccgaaaaacatcgagggccgcatcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgtt |
25527574 |
T |
|
| Q |
407 |
aggagtaattttaaacgagttaaagaagaactcgtgcaaatcaagagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25527575 |
aggagtaattttaaacgagttaaagaagaactcgtacaaatcaagagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtg |
25527674 |
T |
|
| Q |
507 |
aacaccgtcggacgagtcgttgctgagaacgccgactggcgggccatggcagaggcagcgtcgaggttgccggagcgaatcaatgacgtgacacgcgtgt |
606 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527675 |
aacaccgtcggacgattcgttgctgagaacgccgactggcgggccatggcagaggcagcgtcgaggttgccggagcgaatcaatgacgtgacacgcgtgt |
25527774 |
T |
|
| Q |
607 |
ggagttcttcaggaggaggctggggctccgccgttgctgcttgtt |
651 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25527775 |
ggagttcttcaggaggaggctgaggctccgccgttgctgcttgtt |
25527819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 644
Target Start/End: Original strand, 25535209 - 25535841
Alignment:
| Q |
9 |
ttataacactccatggcgtccttatctcttccttgcttaagaaaccaattcatgtaagtggcactcacaacaccatggtggtaatatggacaccttatct |
108 |
Q |
| |
|
|||||||||||||| || |||||||||||| |||||| || |||||||| || |||||| |||||||| | ||| || |||| ||||||| ||| |
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|
| T |
25535209 |
ttataacactccatagcctccttatctctttcttgctcaaaaaaccaatgtatataagtgacactcacatcgccaatgtaataattcggacaccacctct |
25535308 |
T |
|
| Q |
109 |
taagctcatcaataaactcattagccttatccaaatttcccagttgagaacaagccaatgtcagattattatacaccgaggaatcggtatgacccgagtc |
208 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | ||||||||||||| |||||| || | | |||| |||||| | | |||| | ||| |||| || |
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|
| T |
25535309 |
taagctcatcaataagctcattagctttatcaacatttcccagttgaatacaagcagatatgatattagcatacacagtgaaatccgcatggcccgtgt- |
25535407 |
T |
|
| Q |
209 |
taataacatctcaaaccaaatgtcactggcgtcctcaatacgaccagcattgatcatacatttggtgataatctgataggtaaccagtgagggtttgata |
308 |
Q |
| |
|
||||||||| || | | ||||||| ||| |||||||||||||||||| |||||| ||||||||||||||| | || ||||| |||||||||||||| |
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|
| T |
25535408 |
--ataacatcttaaccaagatgtcacgggcatcctcaatacgaccagcactgatcaaacatttggtgataatgcggtaagtaacgggtgagggtttgata |
25535505 |
T |
|
| Q |
309 |
gatgcatcagccttcattttccgaaaaacatcgagggccgcatcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttag |
408 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| || ||||| | ||||||||||||||||||||||| |
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|
| T |
25535506 |
gatgcatcggccttcattttccgaaaaacatcgagagccgcgtcaatgcggccctcatcacaataagcattgataacaaagttataagagacaatgttag |
25535605 |
T |
|
| Q |
409 |
gagtaattttaaacgagttaaagaagaactcgtgcaaatcaagagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaa |
508 |
Q |
| |
|
||| ||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||| || |||||||| ||| | ||||| || ||||||||||| |
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|
| T |
25535606 |
gagcaattttaaagaggttaaagaagaactcgtacaaatcaagagcttcattgtatcttttcgcacggtgcattgcagcaatgatagcattgcaggtgaa |
25535705 |
T |
|
| Q |
509 |
caccgtcggacgagtcgttgctgagaacgccgactggcgggccatggcagaggcagcgtcgaggttgccggagcgaatcaatgacgtgacacgcgtgtgg |
608 |
Q |
| |
|
||| || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |
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|
| T |
25535706 |
cacagttggacgagttgttgctgagaacgtcgactggcgggccatggcagaggcagcgtcgaggttgccggagcgaatcaacgatctgacgcgcgtgtgg |
25535805 |
T |
|
| Q |
609 |
agttcttcaggaggaggctggggctccgccgttgct |
644 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25535806 |
agttcttcaggaggaggctggggctccgccgttgct |
25535841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 211 - 587
Target Start/End: Complemental strand, 25515033 - 25514657
Alignment:
| Q |
211 |
ataacatctcaaaccaaatgtcactggcgtcctcaatacgaccagcattgatcatacatttggtgataatctgataggtaaccagtgagggtttgataga |
310 |
Q |
| |
|
||||||||| |||| | ||||||| ||| || ||||||||||||||| |||||| | ||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
25515033 |
ataacatcttaaacaagatgtcacgggcatcttcaatacgaccagcactgatcaaagctttggtgataatctgataggtaaccggtgagggtttgataga |
25514934 |
T |
|
| Q |
311 |
tgcatcagccttcattttccgaaaaacatcgagggccgcatcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttagga |
410 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| || ||||| | |||||||| |||||||||||||||| |
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|
| T |
25514933 |
tgcatcggccttcattttccgaaaaacatcgagagccgcgtcaatgcggccctcatcacaataggcattgataacaaagttatgagagacaatgttagga |
25514834 |
T |
|
| Q |
411 |
gtaattttaaacgagttaaagaagaactcgtgcaaatcaagagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaaca |
510 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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|
| T |
25514833 |
acaattttaaacaagttaaagaagaactcgtacaaatcaagagcttggttgtgtctttttgcgtggagcatggcaccgatgatggcgttgcaggtgaaca |
25514734 |
T |
|
| Q |
511 |
ccgtcggacgagtcgttgctgagaacgccgactggcgggccatggcagaggcagcgtcgaggttgccggagcgaatc |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
25514733 |
ccgtcggacgagtcgttgctgagaacgccgactggcgggccatggcagaggcagcgttgaggttgccggagcgaatc |
25514657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 711 - 1021
Target Start/End: Original strand, 25527879 - 25528182
Alignment:
| Q |
711 |
tggcgacagagtgacattgttgagtttgaaaccctaaaatttcgtactttctaatttgaaatgaaaatgaaatgaattcttctaacatctttcttcttat |
810 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25527879 |
tggcgaaagagtgacattgttgagtttgaaaccctaaaatttcgtactttctattttgaaatgaaaatgaaatgaattcttctaacatctttcttcttat |
25527978 |
T |
|
| Q |
811 |
atatactacccccagcagaattgtcttaacacctttcttaattaaacctgtttagtttagtttgagaagatgaagtgtgtatctttttccttttcattat |
910 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
25527979 |
atatactaccaccagcagaattgtcttaacacctttcttaattaaacctgtttagtttagtttgagaagatgaagtg-------tatttattttcattat |
25528071 |
T |
|
| Q |
911 |
gacttgcttgttttgacccatactaattatgacttgtattacatactctcttcagtggcattttagcgtgggaatggaaaagagttttccaccgaagaat |
1010 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
25528072 |
gacttgcttgttttgacccatactaattatgacttgtatttcatactcacttcagtggcattttagtgtgggaatggaaaagagttttccacacgagaat |
25528171 |
T |
|
| Q |
1011 |
tttaacgatta |
1021 |
Q |
| |
|
|||||| |||| |
|
|
| T |
25528172 |
tttaactatta |
25528182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 25515236 - 25515099
Alignment:
| Q |
9 |
ttataacactccatggcgtccttatctcttccttgcttaagaaaccaattcatgtaagtggcactcacaacaccatggtggtaatatggacaccttatct |
108 |
Q |
| |
|
|||||||||||||| || ||||| ||||||| ||| || |||| | ||| ||||||||||||||||| || | || |||| ||||||| ||| |
|
|
| T |
25515236 |
ttataacactccatagcctccttctctcttctttgtacaaagcaccactgcatataagtggcactcacaacgccgttgtaataattcggacaccacctct |
25515137 |
T |
|
| Q |
109 |
taagctcatcaataaactcattagccttatccaaattt |
146 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
25515136 |
taaggtcatcaataagctcattagccttatcaaaattt |
25515099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 43223824 - 43223700
Alignment:
| Q |
18 |
tccatggcgtccttatctcttccttgcttaagaaaccaattcatgtaagtggcactcacaacaccatggtggtaatatggacaccttatcttaagctcat |
117 |
Q |
| |
|
||||| || |||||||||||||| ||||||| |||||| | ||||||||| ||| | |||||||||| | || ||||||| ||||||||||| |
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|
| T |
43223824 |
tccatagcctccttatctcttccctgcttaaaaaaccattccatgtaagtagcatttacaacaccatcat---aaacactacaccttcccttaagctcat |
43223728 |
T |
|
| Q |
118 |
caataaactcattagccttatccaaatt |
145 |
Q |
| |
|
||| || ||||||||||||||||||||| |
|
|
| T |
43223727 |
caaaaagctcattagccttatccaaatt |
43223700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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