View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5369_high_14 (Length: 345)
Name: NF5369_high_14
Description: NF5369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5369_high_14 |
 | |
|
| [»] chr6 (10 HSPs) |
| |
|
| [»] chr4 (15 HSPs) |
| |
|
| [»] chr3 (10 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
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|
| [»] chr5 (6 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 345
Target Start/End: Original strand, 27878622 - 27878957
Alignment:
| Q |
9 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27878622 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggggctctgataccactgttaggtaccag |
27878721 |
T |
|
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnn |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
27878722 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaa |
27878820 |
T |
|
| Q |
209 |
nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878821 |
aaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaa |
27878920 |
T |
|
| Q |
309 |
taggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878921 |
taggagaatacaaacactaacactacctaggagaaac |
27878957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 96 - 345
Target Start/End: Original strand, 27873990 - 27874236
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27873990 |
tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
27874089 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27874090 |
aataaagggaaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccac |
27874188 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
27874189 |
tctctcttataaataggagaatacaa--actaacacaaactaggagaaac |
27874236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 96 - 345
Target Start/End: Complemental strand, 1235018 - 1234772
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1235018 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
1234919 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1234918 |
aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
1234820 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | ||||||||||| |
|
|
| T |
1234819 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaac |
1234772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 96 - 345
Target Start/End: Original strand, 26976131 - 26976377
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26976131 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
26976230 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976231 |
aataa-ggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
26976329 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | ||||||||||| |
|
|
| T |
26976330 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaac |
26976377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 95 - 319
Target Start/End: Complemental strand, 30986830 - 30986603
Alignment:
| Q |
95 |
ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaa---cccctc |
191 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||| || |||||| |
|
|
| T |
30986830 |
ctgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctc |
30986732 |
T |
|
| Q |
192 |
aacaaataaagggnnnnnnn-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaatt |
290 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| |
|
|
| T |
30986731 |
aacaaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaatt |
30986632 |
T |
|
| Q |
291 |
accactctctcttataaataggagaatac |
319 |
Q |
| |
|
||||||||||||| ||||||| ||||||| |
|
|
| T |
30986631 |
accactctctcttgtaaatagaagaatac |
30986603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 96 - 283
Target Start/End: Complemental strand, 18968194 - 18968007
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
18968194 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaaca |
18968095 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagag |
283 |
Q |
| |
|
||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||| |
|
|
| T |
18968094 |
aat-aaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagag |
18968007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 30967812 - 30967674
Alignment:
| Q |
9 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
30967812 |
accacagagcatactaagatttttcttaccacaccactagtttatcgcagcggaataacagctacgaactaaaggctctgataccactgttaggtaccag |
30967713 |
T |
|
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacga |
147 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
30967712 |
agtaacaaaatattatcaagcagctaaaataagagacga |
30967674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 142 - 319
Target Start/End: Complemental strand, 30966923 - 30966747
Alignment:
| Q |
142 |
agacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcacta |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
30966923 |
agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta |
30966825 |
T |
|
| Q |
242 |
agtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatac |
319 |
Q |
| |
|
||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
30966824 |
agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaatac |
30966747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 288
Target Start/End: Complemental strand, 21966860 - 21966677
Alignment:
| Q |
101 |
ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataa |
200 |
Q |
| |
|
||||||| |||||| ||| ||||||||||| ||||| ||| | | ||||||||||||||| |||| | ||||||| | |||| |||||||||| |||||| |
|
|
| T |
21966860 |
ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa |
21966763 |
T |
|
| Q |
201 |
agggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaa |
288 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| |||||||||| |
|
|
| T |
21966762 |
agggaaaaat--catggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa |
21966677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 23012413 - 23012667
Alignment:
| Q |
9 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccag |
108 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| |||| |||| | | |||| |||| |||||| |||| ||||| || || |||| |||| || |
|
|
| T |
23012413 |
accacaaagcatactaagttttttcttaccactgcacttgtttgttgatgtggaacaacaactacgagccaatggctcaaatgacattgttgggtaacaa |
23012512 |
T |
|
| Q |
109 |
agtaacaaaa-tattatcacgcaactaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnn |
206 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||| |||||| ||| |||||||||| || ||||||||| ||| | || |||||| ||||| |
|
|
| T |
23012513 |
agtaaaaaaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggg-g |
23012609 |
T |
|
| Q |
207 |
nnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct |
265 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
23012610 |
aaaaacca-tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct |
23012667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 345
Target Start/End: Original strand, 30950096 - 30950430
Alignment:
| Q |
9 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
30950096 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggagctctgataccactgttaggtaccag |
30950195 |
T |
|
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnn |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
30950196 |
agtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa--gggaaa |
30950293 |
T |
|
| Q |
209 |
nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30950294 |
aaaccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaa |
30950393 |
T |
|
| Q |
309 |
taggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950394 |
taggagaatacaaacactaacactacctaggagaaac |
30950430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 345
Target Start/End: Complemental strand, 42266307 - 42265974
Alignment:
| Q |
9 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
42266307 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttagataccag |
42266208 |
T |
|
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnn |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
42266207 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaa |
42266109 |
T |
|
| Q |
209 |
nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266108 |
aaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaa |
42266009 |
T |
|
| Q |
309 |
taggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
42266008 |
taggagaatacaa--actaacacaaactaggagaaac |
42265974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 345
Target Start/End: Original strand, 48701734 - 48702067
Alignment:
| Q |
9 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48701734 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccag |
48701833 |
T |
|
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnn |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
48701834 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaa |
48701932 |
T |
|
| Q |
209 |
nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48701933 |
aaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaa |
48702032 |
T |
|
| Q |
309 |
taggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
||||||||||| | |||||||| | ||||||||||| |
|
|
| T |
48702033 |
taggagaatacta--actaacacaaactaggagaaac |
48702067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 95 - 345
Target Start/End: Original strand, 30945476 - 30945724
Alignment:
| Q |
95 |
ctgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaac |
194 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30945476 |
ctgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
30945575 |
T |
|
| Q |
195 |
aaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacca |
294 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
30945576 |
aaataa--gggaaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattacca |
30945673 |
T |
|
| Q |
295 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945674 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaac |
30945724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 102 - 345
Target Start/End: Original strand, 24520031 - 24520271
Alignment:
| Q |
102 |
gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24520031 |
gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa- |
24520129 |
T |
|
| Q |
202 |
gggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctc |
301 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520130 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctc |
24520229 |
T |
|
| Q |
302 |
ttataaataggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
|||||||||||||||||| | |||||||| | ||||||||||| |
|
|
| T |
24520230 |
ttataaataggagaatacta--actaacacaaactaggagaaac |
24520271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 94 - 345
Target Start/End: Complemental strand, 42270941 - 42270693
Alignment:
| Q |
94 |
actgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaa |
193 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42270941 |
actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
42270842 |
T |
|
| Q |
194 |
caaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacc |
293 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42270841 |
caaataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacc |
42270743 |
T |
|
| Q |
294 |
actctctcttataaataggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
42270742 |
actctctcttataaataggagaatacaa--actaacacaaactaggagaaac |
42270693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 96 - 345
Target Start/End: Original strand, 48697131 - 48697378
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48697131 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
48697230 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48697231 |
aataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
48697330 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | ||||||||||| |
|
|
| T |
48697331 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaac |
48697378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 96 - 327
Target Start/End: Complemental strand, 10427597 - 10427368
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
10427597 |
tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaaca |
10427498 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca |
294 |
Q |
| |
|
||| ||||| | |||||| || |||||| |||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
10427497 |
aat-aaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc- |
10427400 |
T |
|
| Q |
295 |
ctctctcttataaataggagaatacaaacacta |
327 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| |
|
|
| T |
10427399 |
ctctctctt-gaaataggagaatactaacacta |
10427368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 305
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnn |
208 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
48783031 |
agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaata-tttacgtggaaatttctcaacaaataaagggaaaa |
48782933 |
T |
|
| Q |
209 |
nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttat |
305 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||| | ||||||||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
48782932 |
a---catggg---------gagaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat |
48782850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 329
Target Start/End: Complemental strand, 1979375 - 1979269
Alignment:
| Q |
221 |
aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaataca |
320 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||| ||||||||| || | ||||||| ||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
1979375 |
aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaatact |
1979278 |
T |
|
| Q |
321 |
aacactaac |
329 |
Q |
| |
|
| ||||||| |
|
|
| T |
1979277 |
agcactaac |
1979269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
| Q |
107 |
agagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattt |
175 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| | ||||||| | ||| |||||||| ||||||| |
|
|
| T |
30165968 |
agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt |
30165900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 21515462 - 21515516
Alignment:
| Q |
83 |
gctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaa |
137 |
Q |
| |
|
|||||||||||| |||| |||| |||||||||||| |||| |||| ||||||||| |
|
|
| T |
21515462 |
gctctgataccattgttgggtatcagagtaacaaagtattttcacacaactaaaa |
21515516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 1999230 - 1999189
Alignment:
| Q |
75 |
aaccaagggctctgataccactgttaggtaccagagtaacaa |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| |||||| |
|
|
| T |
1999230 |
aaccaagtgctctgataccactgttaggtatcagaataacaa |
1999189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
| Q |
98 |
ttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattt |
175 |
Q |
| |
|
|||||||| ||||||| ||||||||||| | || |||||||||| | |||||||||| ||| ||||| ||| ||||| |
|
|
| T |
36615361 |
ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt |
36615438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 1979604 - 1979565
Alignment:
| Q |
162 |
aacacacaatattttacgtgggaacccctcaacaaataaag |
202 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
1979604 |
aacacacaatattt-acgtggaaacccctcaacaaataaag |
1979565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 345
Target Start/End: Original strand, 5823188 - 5823521
Alignment:
| Q |
9 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5823188 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccag |
5823287 |
T |
|
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnn |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
5823288 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaa |
5823386 |
T |
|
| Q |
209 |
nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823387 |
aaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaa |
5823486 |
T |
|
| Q |
309 |
taggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
||||||||||| | |||||||| | ||||||||||| |
|
|
| T |
5823487 |
taggagaatacta--actaacacaaactaggagaaac |
5823521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 2817176 - 2817486
Alignment:
| Q |
9 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccag |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||| |||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
2817176 |
accacatagcatactaagatttttcttaccacaccactagtttattactgcggaataacaactacgaaccagcggctttgataccactgttaggtaccag |
2817275 |
T |
|
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnn |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
2817276 |
agtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa--gggaaa |
2817373 |
T |
|
| Q |
209 |
nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacca--ctctctcttata |
306 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||| ||||||||||||||||| |||| |||||||||||| |
|
|
| T |
2817374 |
aaaccacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctctcttata |
2817473 |
T |
|
| Q |
307 |
aataggagaatac |
319 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2817474 |
aataggagaatac |
2817486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 96 - 345
Target Start/End: Original strand, 5818513 - 5818759
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5818513 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaact |
5818612 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818613 |
aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
5818711 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | ||||||||||| |
|
|
| T |
5818712 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaac |
5818759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 96 - 345
Target Start/End: Complemental strand, 54546200 - 54545953
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
54546200 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaaca |
54546102 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54546101 |
aataa-ggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccac |
54546003 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54546002 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaac |
54545953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 4579360 - 4579264
Alignment:
| Q |
104 |
accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4579360 |
accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
4579264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 96 - 250
Target Start/End: Original strand, 24659136 - 24659287
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
24659136 |
tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaaca |
24659235 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga |
250 |
Q |
| |
|
||| ||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24659236 |
aat-aaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga |
24659287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 31204781 - 31204936
Alignment:
| Q |
110 |
gtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnnn |
209 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||||| || |||||||||||||||| ||||||| ||||||||| ||||||||||||||| ||| | |
|
|
| T |
31204781 |
gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaata-tttacgtggaaacccctcaacaaat-aagaggaaaa |
31204877 |
T |
|
| Q |
210 |
nnccacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctct |
267 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
31204878 |
aatcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaacctctct |
31204936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 25877142 - 25877086
Alignment:
| Q |
84 |
ctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataa |
140 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
25877142 |
ctctgataccactgttaggtaccagaataacataatattattacgcaactaaaataa |
25877086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 35977161 - 35977103
Alignment:
| Q |
234 |
tttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattac |
292 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
35977161 |
tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac |
35977103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 24671173 - 24671248
Alignment:
| Q |
250 |
aaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacacta |
327 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
24671173 |
aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctctt-gaaataggagaatactaacacta |
24671248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 345
Target Start/End: Original strand, 9444005 - 9444338
Alignment:
| Q |
9 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9444005 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccag |
9444104 |
T |
|
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnn |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
9444105 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaa |
9444203 |
T |
|
| Q |
209 |
nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9444204 |
aaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaa |
9444303 |
T |
|
| Q |
309 |
taggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
||||||||||| | |||||||| | ||||||||||| |
|
|
| T |
9444304 |
taggagaatacta--actaacacaaactaggagaaac |
9444338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 96 - 345
Target Start/End: Original strand, 9439372 - 9439618
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9439372 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
9439471 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9439472 |
aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
9439570 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | ||||||||||| |
|
|
| T |
9439571 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaac |
9439618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
| Q |
113 |
acaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacaca |
169 |
Q |
| |
|
||||||||||||||| | ||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
4799371 |
acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca |
4799315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 345
Target Start/End: Complemental strand, 41718814 - 41718481
Alignment:
| Q |
9 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41718814 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccag |
41718715 |
T |
|
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnn |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
41718714 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaa |
41718616 |
T |
|
| Q |
209 |
nnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41718615 |
aaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaa |
41718516 |
T |
|
| Q |
309 |
taggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
||||||||||| | |||||||| | ||||||||||| |
|
|
| T |
41718515 |
taggagaatacta--actaacacaaactaggagaaac |
41718481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 96 - 345
Target Start/End: Complemental strand, 41723453 - 41723207
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41723453 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
41723354 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41723353 |
aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
41723255 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | ||||||||||| |
|
|
| T |
41723254 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaac |
41723207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 96 - 344
Target Start/End: Complemental strand, 34360273 - 34360028
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
34360273 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaaca |
34360174 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360173 |
aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
34360075 |
T |
|
| Q |
296 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaa |
344 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | |||||||||| |
|
|
| T |
34360074 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaa |
34360028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 96 - 319
Target Start/End: Original strand, 29585300 - 29585522
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29585300 |
tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
29585399 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
295 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29585400 |
aataa-ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccac |
29585498 |
T |
|
| Q |
296 |
tctctcttataaataggagaatac |
319 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
29585499 |
tctctcttataaataggagaatac |
29585522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 115 - 344
Target Start/End: Complemental strand, 34352546 - 34352320
Alignment:
| Q |
115 |
aaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnnnnncca |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
34352546 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-ggggaaaaaacca |
34352448 |
T |
|
| Q |
215 |
cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352447 |
cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggag |
34352348 |
T |
|
| Q |
315 |
aatacaaacactaacactacctaggagaaa |
344 |
Q |
| |
|
||||| | |||||||| | |||||||||| |
|
|
| T |
34352347 |
aatacta--actaacacaaactaggagaaa |
34352320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 23319392 - 23319458
Alignment:
| Q |
72 |
acgaaccaagggctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataa |
140 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || | |||| |||||||| || |||||||||||| |
|
|
| T |
23319392 |
acgaaccaaaagctctgataccactgttaggtatcataataac--aatattattacacaactaaaataa |
23319458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 825883 - 825632
Alignment:
| Q |
9 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
825883 |
accacagagcatactaagatttttcttaccacttcactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccag |
825784 |
T |
|
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnn |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| |
|
|
| T |
825783 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaa |
825684 |
T |
|
| Q |
209 |
nnnccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825683 |
aaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
825632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 105 - 345
Target Start/End: Original strand, 5198664 - 5198901
Alignment:
| Q |
105 |
ccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaaggg |
204 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
5198664 |
ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-ggg |
5198762 |
T |
|
| Q |
205 |
nnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctctta |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5198763 |
gaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctctta |
5198862 |
T |
|
| Q |
305 |
taaataggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
||||||||||||||| | |||||||| | ||||||||||| |
|
|
| T |
5198863 |
taaataggagaatacta--actaacacaaactaggagaaac |
5198901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 15603272 - 15602972
Alignment:
| Q |
18 |
catactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaa |
117 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| | || |||||||||| |||||||||| | |||||||| ||||||| ||| ||||||| ||| |
|
|
| T |
15603272 |
catactaagatatttcttaccactccaccagttttttgcatcggaataacaattacgaaccaatgactctgatagcactgttgggtgtgagagtaagaaa |
15603173 |
T |
|
| Q |
118 |
atattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnnnnnccacgg |
217 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| |
|
|
| T |
15603172 |
atattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-aaggggaaaaaaccacgg |
15603074 |
T |
|
| Q |
218 |
ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | || |||| |||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
15603073 |
ggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaat |
15602974 |
T |
|
| Q |
318 |
ac |
319 |
Q |
| |
|
|| |
|
|
| T |
15602973 |
ac |
15602972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 96 - 260
Target Start/End: Complemental strand, 830452 - 830288
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
830452 |
tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
830353 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
260 |
Q |
| |
|
||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
830352 |
aataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga |
830288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 103 - 327
Target Start/End: Complemental strand, 28716070 - 28715849
Alignment:
| Q |
103 |
taccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaag |
202 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||| |||||| ||||||||| |||||| | |
|
|
| T |
28716070 |
taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataagg |
28715972 |
T |
|
| Q |
203 |
ggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctct |
302 |
Q |
| |
|
|| |||| | |||| |||||||||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| | || |
|
|
| T |
28715971 |
ggaaaaa--ccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcc |
28715874 |
T |
|
| Q |
303 |
tataaataggagaatacaaacacta |
327 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
28715873 |
tataaataggagaatactaacacta |
28715849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 105 - 283
Target Start/End: Original strand, 30396920 - 30397096
Alignment:
| Q |
105 |
ccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaaggg |
204 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| ||| | ||||||||||||||| ||||| |
|
|
| T |
30396920 |
ccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaat-aaggg |
30397016 |
T |
|
| Q |
205 |
nnnnnnnccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaactacaaggagag |
283 |
Q |
| |
|
||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
30397017 |
aaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagag |
30397096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 325
Target Start/End: Complemental strand, 8004259 - 8004161
Alignment:
| Q |
226 |
tagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacac |
325 |
Q |
| |
|
|||| |||||||||| | |||||||||||| | |||||||| ||| | ||| ||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
8004259 |
tagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaattac-actctctcttataaataggagaatactaacac |
8004161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 13843710 - 13844014
Alignment:
| Q |
9 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccag |
108 |
Q |
| |
|
|||||| | |||||||| ||||||||||||||||||| ||||| ||||||||| ||| |||| |||| |||||| |||||||| | | || ||| |
|
|
| T |
13843710 |
accacataacatactaatatttttcttaccactccaccagtttgctacagcggaacaactatcacgagccaatggctctaataccacttgtggctatcag |
13843809 |
T |
|
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaac-tgaacacacaatattttacgtgggaacccctcaacaaataaagggnnn |
207 |
Q |
| |
|
||||| |||||||||||||| || |||| |||| ||||||| || || |||||||| |||||| |||||| ||||||||||||||||| | | |
|
|
| T |
13843810 |
agtaataaaatattatcacgtaagtaaagtaagttttgagaaaaaagaaaaatgaacaca--atattt-acgtggaaacccctcaacaaataaggagaaa |
13843906 |
T |
|
| Q |
208 |
nnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataa |
307 |
Q |
| |
|
| || || |||| |||| ||||| ||||||||||||||||||||||| || | ||| |||||| ||| || |||||||||||| | ||| || |
|
|
| T |
13843907 |
aattata--ggttaaaagtatagaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaa |
13844004 |
T |
|
| Q |
308 |
ataggagaat |
317 |
Q |
| |
|
|||||||||| |
|
|
| T |
13844005 |
ataggagaat |
13844014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 31592910 - 31593014
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
|||| |||| || ||||||| ||||||||||| || || |||||||||||||||||||||||| |||| |||||| ||||||||| || | ||||| | |
|
|
| T |
31592910 |
tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaata |
31593009 |
T |
|
| Q |
196 |
aataa |
200 |
Q |
| |
|
||||| |
|
|
| T |
31593010 |
aataa |
31593014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 319
Target Start/End: Original strand, 13840240 - 13840456
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| || || ||||| ||| |||||| ||||||| || |||||||| ||||| || ||| |||||||| |
|
|
| T |
13840240 |
tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccga--acacaata-tttacatgagaattcctcaaca |
13840336 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccac |
295 |
Q |
| |
|
|| || ||| || || ||||||||||| || ||| || |||| || |||||||| |||||||||||| || ||||||||||||||||| | |
|
|
| T |
13840337 |
aacaagggggaaaa---catggagcaagagtagaaaatttttaccaagt-aaaaaaattacaaaacctctctctaaatataaggagagtacaattacaat |
13840432 |
T |
|
| Q |
296 |
tctctcttataaataggagaatac |
319 |
Q |
| |
|
||||||||| ||||| ||||||| |
|
|
| T |
13840433 |
tctctcttaaaaataaaagaatac |
13840456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 12175768 - 12175828
Alignment:
| Q |
116 |
aaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatatttt |
176 |
Q |
| |
|
||||||||||||||||||||||||| ||| || |||| || || ||||||||||||||||| |
|
|
| T |
12175768 |
aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt |
12175828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 345
Target Start/End: Complemental strand, 825635 - 825600
Alignment:
| Q |
310 |
aggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
825635 |
aggagaatacaaacactaacactacctaggagaaac |
825600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 345
Target Start/End: Complemental strand, 830291 - 830256
Alignment:
| Q |
310 |
aggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
830291 |
aggagaatacaaacactaacactacctaggagaaac |
830256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 101 - 327
Target Start/End: Original strand, 16183636 - 16183860
Alignment:
| Q |
101 |
ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
16183636 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaat-a |
16183734 |
T |
|
| Q |
201 |
agggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattaccactctc |
299 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
16183735 |
aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctc |
16183833 |
T |
|
| Q |
300 |
tcttataaataggagaatacaaacacta |
327 |
Q |
| |
|
|||| |||||||||||||| ||||||| |
|
|
| T |
16183834 |
tctt-gaaataggagaatactaacacta |
16183860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 96 - 345
Target Start/End: Complemental strand, 30235339 - 30235090
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
|||| |||||||||||| ||||||||||| || || ||||||||| | | |||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
30235339 |
tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacg |
30235241 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctc-taactacaaggagagtacaattacca |
294 |
Q |
| |
|
||||| ||| ||||||| ||||||||| |||||||| ||| | ||||||||||||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
30235240 |
aataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattacca |
30235141 |
T |
|
| Q |
295 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaac |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
30235140 |
ctctctcttataaataggagaatacaaacactaacactacgtaagagaaac |
30235090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 72 - 319
Target Start/End: Original strand, 8139940 - 8140183
Alignment:
| Q |
72 |
acgaaccaagggctctgataccactgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaat |
171 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
8139940 |
acgaaccaatggctctaataccactgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaat |
8140039 |
T |
|
| Q |
172 |
attttacgtgggaacccctcaacaaataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaa |
271 |
Q |
| |
|
| |||| |||| ||||||||||||||| ||||| ||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| | |
|
|
| T |
8140040 |
a-tttatgtggaaacccctcaacaaat-aaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctctta |
8140137 |
T |
|
| Q |
272 |
ctacaaggagagtacaattaccactctctcttataaataggagaatac |
319 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
8140138 |
atacaaggagagacaaattacc-ctctctctt-gaaataggagaatac |
8140183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 8138384 - 8138645
Alignment:
| Q |
16 |
agcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| | || ||||||| | ||||||||| |||||| ||||||||||| |||| ||||||| || |
|
|
| T |
8138384 |
agcatactaagatttttcttaccactcgaccagttg----cggcagaataacgacaacgaaccaatggctctaataccactgttgggtagcagagtatca |
8138479 |
T |
|
| Q |
116 |
aaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnnnnnnccac |
215 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||| |||| |||||||| || ||| |||| ||||||| |||||| ||||| |||| |
|
|
| T |
8138480 |
aagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagta-attatgtggaaaccccttaacaaa-caaggggagaaaaccac |
8138577 |
T |
|
| Q |
216 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagag |
283 |
Q |
| |
|
| ||||||| ||||||||||||||||| |||||||||||||| |||||| |||||| ||||||||||| |
|
|
| T |
8138578 |
gaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag |
8138645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 25441163 - 25441073
Alignment:
| Q |
9 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgtt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||||| |
|
|
| T |
25441163 |
accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacaactacaaatcaatggctctgataccactgtt |
25441073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 36528415 - 36528518
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
|||| |||| |||||||||||| || || ||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||| |||||||| || |
|
|
| T |
36528415 |
tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacg |
36528513 |
T |
|
| Q |
196 |
aataa |
200 |
Q |
| |
|
||||| |
|
|
| T |
36528514 |
aataa |
36528518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 255
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
| Q |
109 |
agtaacaaaatattatcacgcaactaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataaagggnnn |
207 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| ||| |||||||| ||| || ||| |||| ||||| | | || |||||||||||||| ||| |
|
|
| T |
5102606 |
agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataata-tttacat-gaaaaccctcaacaaataagggg--a |
5102701 |
T |
|
| Q |
208 |
nnnnccacggggcaagagtagagaactttcactaagtggaagaaatta |
255 |
Q |
| |
|
||| || ||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
5102702 |
aaaaccatggagcaagagtagataacttttactaagtgggagaaatta |
5102749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 96 - 327
Target Start/End: Original strand, 27226 - 27455
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
27226 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaaca |
27325 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca |
294 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||| |||||||| |
|
|
| T |
27326 |
aat-aaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca |
27424 |
T |
|
| Q |
295 |
ctctctcttataaataggagaatacaaacacta |
327 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||| |
|
|
| T |
27425 |
-tctctctt-gaaataggtgaatactaacacta |
27455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 96 - 327
Target Start/End: Complemental strand, 4130401 - 4130173
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| || ||||||||| |
|
|
| T |
4130401 |
tgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaa-aatttacgtggaaatccctcaaca |
4130303 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca |
294 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
4130302 |
aataaaggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagagacaaattacc- |
4130205 |
T |
|
| Q |
295 |
ctctctcttataaataggagaatacaaacacta |
327 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||| |
|
|
| T |
4130204 |
ctctctctt-gaaataggacaatactaacacta |
4130173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 96 - 327
Target Start/End: Complemental strand, 46191546 - 46191319
Alignment:
| Q |
96 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaaca |
195 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
46191546 |
tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaa--cacaatattttacgtggaaacccctcaaca |
46191449 |
T |
|
| Q |
196 |
aataaagggnnnnnnnccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaactacaaggagagtacaattacca |
294 |
Q |
| |
|
||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| || |||||||| ||||||| |
|
|
| T |
46191448 |
aat-aaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc- |
46191351 |
T |
|
| Q |
295 |
ctctctcttataaataggagaatacaaacacta |
327 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| |
|
|
| T |
46191350 |
ctctctctt-gaaataggagaatactaacacta |
46191319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 101 - 283
Target Start/End: Original strand, 30697120 - 30697300
Alignment:
| Q |
101 |
ggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtgggaacccctcaacaaataa |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||| ||||||||| ||||||||||||||| | |
|
|
| T |
30697120 |
ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaata-tttacgtggaaacccctcaacaaat-a |
30697217 |
T |
|
| Q |
201 |
agggnnnnnnnccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagag |
283 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
30697218 |
aggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag |
30697300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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