View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5369_high_17 (Length: 330)
Name: NF5369_high_17
Description: NF5369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5369_high_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 0
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 42824615 - 42824934
Alignment:
| Q |
11 |
cacagatccaccacaaacctcttctccgacccactcgactcccatcctctctggttcaaacctacctccttcctctcccctgacttcgattccgaatcct |
110 |
Q |
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| T |
42824615 |
cacagatccaccacaaacctcttctccgacccactcgactcccatcctctctggttcaaacctacctccttcctctcccctgacttcgattccgaatcct |
42824714 |
T |
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| Q |
111 |
acatttccgaactccgaaccttcgtcccattcgacactctccgatcggaactcaacaactatctctcgtcgctaaatcacgagctcattgatctaatcaa |
210 |
Q |
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| T |
42824715 |
acatttccgaactccgaaccttcgtcccattcgacactctccgatcggaactcaacaactatctctcgtcgctaaatcacgagctcattgatctaatcaa |
42824814 |
T |
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| Q |
211 |
tcgcgattatgctgatttcgttaatttgagtacgaagcttgttgatgtggatgcggcggtggtgcggatgcgggcgccgcttgttgagttgagggagaag |
310 |
Q |
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| T |
42824815 |
tcgcgattatgctgatttcgttaatttgagtacgaagcttgttgatgtggatgcggcggtggtgcggatgcgggcgccgcttgttgagttgagggagaag |
42824914 |
T |
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| Q |
311 |
attgaacagtttagaggttc |
330 |
Q |
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| T |
42824915 |
attgaacagtttagaggttc |
42824934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 235
Target Start/End: Complemental strand, 48411741 - 48411586
Alignment:
| Q |
80 |
ttcctctcccctgacttcgattccgaatcctacatttccgaactccgaaccttcgtcccattcgacactctccgatcggaactcaacaactatctctcgt |
179 |
Q |
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|||||||||||| |||||||||||||||| ||||| || |||| | ||||||||| || ||| |||||||||| || ||||||||||||| || || | |
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| T |
48411741 |
ttcctctcccctaacttcgattccgaatcatacatctctcaacttccaaccttcgttcccttccacactctccgttcacaactcaacaactacctttcat |
48411642 |
T |
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| Q |
180 |
cgctaaatcacgagctcattgatctaatcaatcgcgattatgctgatttcgttaat |
235 |
Q |
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| T |
48411641 |
ccctaaatcaccaactcattcatcttatcaatcgcgattactctgatttcgctaat |
48411586 |
T |
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