View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5369_high_18 (Length: 322)
Name: NF5369_high_18
Description: NF5369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5369_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 25527180 - 25526871
Alignment:
| Q |
1 |
ataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttggga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527180 |
ataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttggga |
25527081 |
T |
|
| Q |
101 |
cttgtttcatgacatgttagacaatcacacgccttccacttttcatgatgtcgactctgacacttttactttgatggtcgaggaatgcttgaagctcggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527080 |
cttgtttcatgacatgttagacaatcacacgccttccacttttcatggtgtcgactctgacacttttactttgatggtcgaggaatgcttgaagctcggt |
25526981 |
T |
|
| Q |
201 |
aaggttgatgaagcccttgcaactttgaagaaagttggaaccaaacctgattctaagccttttttcttggatgttgatggctactgtcagctcatctcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25526980 |
aaggttgatgaagcccttgcaactttgaagaaagttggaaccaaacctgattctaagccttttttcttggatgttgatggctactgtcagctcatctcca |
25526881 |
T |
|
| Q |
301 |
ttttctgtgc |
310 |
Q |
| |
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|||||||||| |
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| T |
25526880 |
ttttctgtgc |
25526871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 305
Target Start/End: Complemental strand, 25535204 - 25534908
Alignment:
| Q |
9 |
ttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttgggacttgtttc |
108 |
Q |
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||||||||||||||||||| |||||||||| ||||| || || | ||||||||| ||||||||| || |||||| ||||| ||||||||||||||||||| |
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| T |
25535204 |
ttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgctcaggtttggaaaaaaaaccgaggcttgggacttgtttc |
25535105 |
T |
|
| Q |
109 |
atgacatgttagacaatcacacgccttccacttttcatgatgtcgactctgacacttttactttgatggtcgaggaatgcttgaagctcggtaaggttga |
208 |
Q |
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||| ||||||||||||||| || ||| |||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||||||| |||||| |||| |
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| T |
25535104 |
atggcatgttagacaatcatacacctcccacttttcatgctgtcaactctgacacttttattttgatggtcgatgaatgcttgaagcttggtaagattga |
25535005 |
T |
|
| Q |
209 |
tgaagcccttgcaactttgaagaaagttggaaccaaacctgattctaagccttttttcttggatgttgatggctactgtcagctcatctccattttc |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||| | |||||||||||| |||| |
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| T |
25535004 |
tgaagcccttgcaactttgaagaaagttggaaccaagcctgattctaggccttttttcttggatattgatggcaactctaagctcatctccagtttc |
25534908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 25515241 - 25515550
Alignment:
| Q |
9 |
ttattgaaccgcaagtgtaggatg---agacctgaaactggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttgggacttgt |
105 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| || || |||||||| |||||||||| || |||||| |||||||||||||||||||||| |
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| T |
25515241 |
ttattgaaccgcaagtgtacgatgatgagacctgaaacttgcaatattctcttgacggttttgctctcgtctggaaaaaaaactgaggcttgggacttgt |
25515340 |
T |
|
| Q |
106 |
ttcatgacatgttagacaatcacacgccttccacttttcatgatgtcgactctgacacttttactttgatggtcgaggaatgcttgaagctcggtaaggt |
205 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||||||| ||| |||||| ||||||||| | |||||||| | |||||||| ||||| |||||||| |
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| T |
25515341 |
ttcatgacatgttagacaatcacacacctcccacttttcatggtgttgactctaacacttttattgtgatggtcaatgaatgcttcaagcttggtaaggt |
25515440 |
T |
|
| Q |
206 |
tgatgaagcccttgcaactttgaagaaag-------ttggaaccaaacctgattctaagccttttttcttggatgttgatggctactgtcagctcatctc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||||| |
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| T |
25515441 |
tgatgaagcccttgcaactttgaagaaagttggaacttggaaccaagcctgattctaagccttttttcttggatgttgatggcaactctaagctcatctc |
25515540 |
T |
|
| Q |
299 |
cattttctgt |
308 |
Q |
| |
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| |||||||| |
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|
| T |
25515541 |
ccttttctgt |
25515550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 25538197 - 25538136
Alignment:
| Q |
9 |
ttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgct |
70 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| || ||| ||| |||||||| ||||| |
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| T |
25538197 |
ttattgaaccacaagtttaggatgagacctgaaacttgcaatgctcttttggaggtgttgct |
25538136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 43223830 - 43224073
Alignment:
| Q |
1 |
ataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgctcaagtatggaaagaaaactgaggcttggga |
100 |
Q |
| |
|
|||||||||| || | ||| ||| |||||||| ||||| |||| | ||||||| |||||||||||||| ||| ||| ||||||| ||||||||| | |
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| T |
43223830 |
ataagtctttcatggatcgcgagtttaggatgacacctgcaacttgtaatgttctgttggaggttttgcttaagcatgataagaaaaaggaggcttggaa |
43223929 |
T |
|
| Q |
101 |
cttgtttcatgacatgttagacaatcacacgccttccacttttcatgatgtcgactctgacacttttactttgatggtcgaggaatgcttgaagctcggt |
200 |
Q |
| |
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|||||| || | ||||| || |||||||| ||| | | |||||| | ||| | || || ||||||| | | ||||| | || ||||| |||| ||| |
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| T |
43223930 |
attgtttgatcagatgttggataatcacactcctcctaattttcaagctgttaattccgatacttttaatatcatggttaatgagtgctttaagcatggt |
43224029 |
T |
|
| Q |
201 |
aaggttgatgaagcccttgcaactttgaagaaagttggaaccaa |
244 |
Q |
| |
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||| ||||||||||||||| ||||| | ||| ||||| ||||| |
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|
| T |
43224030 |
aagtttgatgaagcccttgatacttttaggaaggttggtaccaa |
43224073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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