View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5369_high_1_N (Length: 821)

Name: NF5369_high_1_N
Description: NF5369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5369_high_1_N
NF5369_high_1_N
[»] chr5 (7 HSPs)
chr5 (1-535)||(38816178-38816712)
chr5 (196-345)||(38821782-38821928)
chr5 (7-64)||(22423764-22423822)
chr5 (17-66)||(8420075-8420124)
chr5 (12-64)||(9929668-9929720)
chr5 (36-66)||(24906250-24906280)
chr5 (87-125)||(35665559-35665597)
[»] chr3 (4 HSPs)
chr3 (589-818)||(34899746-34899975)
chr3 (28-66)||(4466538-4466576)
chr3 (36-66)||(5440965-5440995)
chr3 (28-66)||(13807237-13807275)
[»] chr1 (1 HSPs)
chr1 (11-64)||(48547938-48547991)
[»] scaffold0168 (3 HSPs)
scaffold0168 (3-64)||(21217-21278)
scaffold0168 (3-64)||(21088-21149)
scaffold0168 (3-64)||(21346-21407)
[»] chr6 (4 HSPs)
chr6 (17-64)||(426478-426525)
chr6 (17-64)||(5732474-5732521)
chr6 (36-66)||(34073276-34073306)
chr6 (23-64)||(2117134-2117175)
[»] chr2 (5 HSPs)
chr2 (17-64)||(19536361-19536408)
chr2 (17-64)||(19574031-19574078)
chr2 (17-63)||(18255945-18255991)
chr2 (17-63)||(34691770-34691816)
chr2 (17-63)||(34714182-34714228)
[»] chr7 (1 HSPs)
chr7 (36-65)||(17852091-17852120)


Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 38816712 - 38816178
Alignment:
Q  1 attatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagttatattcgtgaatcgtgatagtgttggagactgac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38816712 attatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgattcatagttatattcgtgaatcgtgatagtgttggagactgac 38816613  T
Q  101 atctgttggacactggacacacctttaatatgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttgttg 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816612 atctgttggacactgcacacacctttaatatgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttgttg 38816513  T
Q  201 tgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaagggacaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816512 tgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaagggacaaat 38816413  T
Q  301 ggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctagattttgcagttggctactttttgtggttacagttggtatac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816412 ggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctagattttgcagttggctactttttgtggttacagttggtatac 38816313  T
Q  401 atcacggccttatgtaaattaaactgactttgtctgttagagaagggtatatagttgtatgaggtttctttgggtaggtgagaaattgaggttcaaagga 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816312 atcacggccttatgtaaattaaactgactttgtctgttagagaagggtatatagttgtatgaggtttctttgggtaggtgagaaattgaggttcaaagga 38816213  T
Q  501 tacaatataccttttcttgcattttctttcactga 535  Q
    |||||||||||||||||||||||||||||||||||    
T  38816212 tacaatataccttttcttgcattttctttcactga 38816178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 196 - 345
Target Start/End: Complemental strand, 38821928 - 38821782
Alignment:
Q  196 tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga 295  Q
    |||||||||| |||||||||||||||| ||||||||||||||  ||||  | ||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  38821928 tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga 38821829  T
Q  296 caaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttt 345  Q
    |||||||||   || ||||||| |||  ||||| ||||||||||||||||    
T  38821828 caaatggta---tgatgtttagatttgcttaaatcttgttcttagggttt 38821782  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 22423822 - 22423764
Alignment:
Q  7 tgtcggtgtggtgtcggtgtc-ggacatggctaattcgaggagtgtccgtgcttcatag 64  Q
    ||||||||| ||||||||||| ||||| | ||||| |||||||||||||||||||||||    
T  22423822 tgtcggtgtcgtgtcggtgtctggacacgcctaatccgaggagtgtccgtgcttcatag 22423764  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 8420075 - 8420124
Alignment:
Q  17 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 66  Q
    |||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  8420075 gtgtcggtgtcggacgcgcctaattcgaggagtatccgtgcttcatagtt 8420124  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 9929668 - 9929720
Alignment:
Q  12 gtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 64  Q
    |||| |||||||| ||||||| | ||||||||||||||||| |||||||||||    
T  9929668 gtgtcgtgtcggtatcggacacgactaattcgaggagtgtctgtgcttcatag 9929720  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 24906280 - 24906250
Alignment:
Q  36 ctaattcgaggagtgtccgtgcttcatagtt 66  Q
    |||||||||||||||||||||||||||||||    
T  24906280 ctaattcgaggagtgtccgtgcttcatagtt 24906250  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
Q  87 tgttggagactgacatctgttggacactggacacacctt 125  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  35665597 tgttggaaactgacatgtgttggacactggacacacctt 35665559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 230; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 589 - 818
Target Start/End: Original strand, 34899746 - 34899975
Alignment:
Q  589 gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899746 gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata 34899845  T
Q  689 aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa 788  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899846 aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa 34899945  T
Q  789 gtttggtagtttcaactttcaagttgagat 818  Q
    ||||||||||||||||||||||||||||||    
T  34899946 gtttggtagtttcaactttcaagttgagat 34899975  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 4466576 - 4466538
Alignment:
Q  28 ggacatggctaattcgaggagtgtccgtgcttcatagtt 66  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  4466576 ggacacggcttattcgaggagtgtccgtgcttcatagtt 4466538  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 5440995 - 5440965
Alignment:
Q  36 ctaattcgaggagtgtccgtgcttcatagtt 66  Q
    |||||||||||||||||||||||||||||||    
T  5440995 ctaattcgaggagtgtccgtgcttcatagtt 5440965  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 13807237 - 13807275
Alignment:
Q  28 ggacatggctaattcgaggagtgtccgtgcttcatagtt 66  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  13807237 ggacatgcctaattcgaggagtgtccgtgtttcatagtt 13807275  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 48547991 - 48547938
Alignment:
Q  11 ggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 64  Q
    ||||| |||||||||||||| | | |||||||||||||||||||||||||||||    
T  48547991 ggtgtcgtgtcggtgtcggatacgcctaattcgaggagtgtccgtgcttcatag 48547938  T

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Target: scaffold0168 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 21217 - 21278
Alignment:
Q  3 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 64  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||||||| ||||||||||||||    
T  21217 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgaggagtatccgtgcttcatag 21278  T

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Target: scaffold0168; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 21088 - 21149
Alignment:
Q  3 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 64  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| ||| ||||||||||||||    
T  21088 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtatccgtgcttcatag 21149  T

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Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 21346 - 21407
Alignment:
Q  3 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 64  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| |||||| |||||||||||    
T  21346 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtgtctgtgcttcatag 21407  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 426525 - 426478
Alignment:
Q  17 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 64  Q
    |||||||||||||||| | |||||  ||||||||||||||||||||||    
T  426525 gtgtcggtgtcggacacgcctaatctgaggagtgtccgtgcttcatag 426478  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 5732521 - 5732474
Alignment:
Q  17 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 64  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  5732521 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 5732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 34073306 - 34073276
Alignment:
Q  36 ctaattcgaggagtgtccgtgcttcatagtt 66  Q
    |||||||||||||||||||||||||||||||    
T  34073306 ctaattcgaggagtgtccgtgcttcatagtt 34073276  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 2117134 - 2117175
Alignment:
Q  23 gtgtcggacatggctaattcgaggagtgtccgtgcttcatag 64  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  2117134 gtgtcggacatgcctaatcggaggagtgtccgtgcttcatag 2117175  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 19536408 - 19536361
Alignment:
Q  17 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 64  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  19536408 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 19536361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 19574031 - 19574078
Alignment:
Q  17 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 64  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||||    
T  19574031 gtgtcggtgtcggacacacctaattcgaggagtgtccatgcttcatag 19574078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 18255991 - 18255945
Alignment:
Q  17 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 63  Q
    |||||||||||||||| | ||||| | ||||||||||||||||||||    
T  18255991 gtgtcggtgtcggacacgcctaatccaaggagtgtccgtgcttcata 18255945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 34691816 - 34691770
Alignment:
Q  17 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 63  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34691816 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34691770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 34714228 - 34714182
Alignment:
Q  17 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 63  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34714228 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34714182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 17852091 - 17852120
Alignment:
Q  36 ctaattcgaggagtgtccgtgcttcatagt 65  Q
    ||||||||||||||||||||||||||||||    
T  17852091 ctaattcgaggagtgtccgtgcttcatagt 17852120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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