View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5369_high_22 (Length: 305)
Name: NF5369_high_22
Description: NF5369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5369_high_22 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0128 (2 HSPs) |
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| [»] scaffold0267 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 13784211 - 13783907
Alignment:
| Q |
1 |
ttcttcaatttcctaacaacaaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13784211 |
ttcttcaatttcctaacaacaaaatttgggcggccgatgaacatatgcatagcttggttttgcctcattctcatccacattaagctcctctacatcaatt |
13784112 |
T |
|
| Q |
101 |
gtttgtttttagaacttttgctaaactatgaaagtggcgtgatggctatcgatggttccttaaatgtgttttccttagctagtttgactattttgttgta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13784111 |
gtttgtttttagaacttttgctaaactatgaaagtggcgtgatggctatcgatggttccttaaatgtgttttccttagctagtttgactattttgttgta |
13784012 |
T |
|
| Q |
201 |
tgatgatgaaccttcaatgtgttttccatagctagtttgactattttgttgtatgatttcatcagtacttataactagttgttggatcaaagtctttgga |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13784011 |
tgatgatgaaccttcaatgtgttttccttagctagtttgagtattttgttgtatgatttcatcagtacttataactagttgttggatcaaagtctttgga |
13783912 |
T |
|
| Q |
301 |
ttgga |
305 |
Q |
| |
|
||||| |
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|
| T |
13783911 |
ttgga |
13783907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 33871 - 33664
Alignment:
| Q |
1 |
ttcttcaatttcctaacaacaaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaatt |
100 |
Q |
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|
|||||| | ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| |||||| |
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| T |
33871 |
ttcttcgacttcctaacaaccaaatttgggcggccgatgaacatatgcgtagcttggttttgcctcgtcctcatccacattaagctcctatacttcaatt |
33772 |
T |
|
| Q |
101 |
gtttgtttttagaacttttgctaaactatgaaagtggcgtgatggctatcgatggttccttaaatgtgttttcct----tagctagtttgactattttgt |
196 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | ||||||||||||||||||||| |
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| T |
33771 |
gtttgttttcaaaacttttgctaaactatgaaagtggcgtgatggctatcgatgggttcttaaatgtgttttcattagctagctagtttgactattttgt |
33672 |
T |
|
| Q |
197 |
tgtatgat |
204 |
Q |
| |
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|||||||| |
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| T |
33671 |
tgtatgat |
33664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 33692 - 33616
Alignment:
| Q |
229 |
tagctagtttgactattttgttgtatgatttcatcagtacttataactagttgttggatcaaagtctttggattgga |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33692 |
tagctagtttgactattttgttgtatgattttgtcagtacttataactagttgttggatcgaagtctttggattgga |
33616 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 40794020 - 40793817
Alignment:
| Q |
1 |
ttcttcaatttcctaacaacaaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaatt |
100 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| |
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| T |
40794020 |
ttcttcaacttcctaacaatcaaatttaggcggccgatgaacatatgcatagcttgattttgcctcgtcatcatccacattaagctcctctatgtcaatt |
40793921 |
T |
|
| Q |
101 |
gtttgtttttagaacttttgctaaactatgaaagtggcgtgatggctatcgatggttccttaaatgtgttttccttagctagtttgactattttgttgta |
200 |
Q |
| |
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||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| ||| | || |||||||||||||||||| |
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| T |
40793920 |
gtttgttttcagaacttttgctagactatgaaagtggtgtgatggctatcgatgattccttaaatgtgtttttcttgggtaatttgactattttgttgta |
40793821 |
T |
|
| Q |
201 |
tgat |
204 |
Q |
| |
|
|||| |
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|
| T |
40793820 |
tgat |
40793817 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 40793863 - 40793769
Alignment:
| Q |
211 |
ccttcaatgtgttttccatagctagtttgactattttgttgtatgatttcatcagtacttataactagttgttggatcaaagtctttggattgga |
305 |
Q |
| |
|
|||| |||||||||| | | | || |||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||| |
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| T |
40793863 |
ccttaaatgtgtttttcttgggtaatttgactattttgttgtatgattttgtcggtacttataaatagttgttggatcaaagtctttgaattgga |
40793769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 204
Target Start/End: Original strand, 13632 - 13804
Alignment:
| Q |
33 |
gctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgttttt-agaacttttgctaaactatga |
131 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || ||| |||||||||| ||| | | || ||| ||||||||||| ||| || || || | || |
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| T |
13632 |
gctgatgaacatatgcagagcttggttttgccttgtcctcgtccacattaatctcgtatgcaacaaatgtttgtttttctgaatttatgttaggttgtgc |
13731 |
T |
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| Q |
132 |
aagtggcgtgatggctatcgatggttccttaaatgtgttttccttagctagtttgactattttgttgtatgat |
204 |
Q |
| |
|
| |||| |||| |||| |||||||| |||| | |||||||||||| ||||||||||||||||||| ||||| |
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| T |
13732 |
atttggcatgatatctattgatggttctttaattatgttttccttagatagtttgactattttgttggatgat |
13804 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 13767 - 13851
Alignment:
| Q |
220 |
tgttttccatagctagtttgactattttgttgtatgatttcatcagtacttataactagttgttggatcaaagtctttggattgga |
305 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||| | | ||||||||| |
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| T |
13767 |
tgttttccttagatagtttgactattttgttggatgatttcat-tgtacttgttgctagttgttggatcaaattatgtggattgga |
13851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 33637487 - 33637299
Alignment:
| Q |
16 |
acaacaaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgtttttagaac |
115 |
Q |
| |
|
||||| |||||||| ||||||||||||||| | ||||||||||| || ||| ||| ||||||||||||| || | || ||||||||||| ||| ||| |
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| T |
33637487 |
acaaccaaatttggtatgctgatgaacatatgaagagcttggtttttccccgtcctcttccacattaagcttctatgcaacaattgtttgtattttgaat |
33637388 |
T |
|
| Q |
116 |
ttttgctaaactatgaaagtggcgtgatggctatcgatggttccttaaatgtgttttccttagctagtttgactattttgttgtatgat |
204 |
Q |
| |
|
|| || || || |||| | |||||| |||| |||||||||||| ||||||||| ||| |||||| |||||||||||| ||||| |
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|
| T |
33637387 |
ttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagtttaactattttgttggatgat |
33637299 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 204
Target Start/End: Original strand, 3838151 - 3838323
Alignment:
| Q |
33 |
gctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgttttt-agaacttttgctaaactatga |
131 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| || |||||||||||||| ||| | | || ||| ||||||||||| ||| || || || | || |
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|
| T |
3838151 |
gctgaggaacatatgcagagcttggttttgccttgtcctcatccacattaatctcgtatgcaacaactgtttgtttttctgaatttatgttaggttttgc |
3838250 |
T |
|
| Q |
132 |
aagtggcgtgatggctatcgatggttccttaaatgtgttttccttagctagtttgactattttgttgtatgat |
204 |
Q |
| |
|
| |||| |||| |||| |||||||| |||| | |||||||||||| |||||||||||||||| || ||||| |
|
|
| T |
3838251 |
atttggcatgatatctattgatggttctttaattatgttttccttagatagtttgactattttgctggatgat |
3838323 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 3838286 - 3838370
Alignment:
| Q |
220 |
tgttttccatagctagtttgactattttgttgtatgatttcatcagtacttataactagttgttggatcaaagtctttggattgga |
305 |
Q |
| |
|
|||||||| ||| |||||||||||||||| || |||||||||| |||||||| ||||||||||||||||| | | ||||||||| |
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| T |
3838286 |
tgttttccttagatagtttgactattttgctggatgatttcat-tgtacttattgctagttgttggatcaaattatgtggattgga |
3838370 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 20475685 - 20475632
Alignment:
| Q |
151 |
gatggttccttaaatgtgttttccttagctagtttgactattttgttgtatgat |
204 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||||| || ||||||||| ||||| |
|
|
| T |
20475685 |
gatggttacttaattgtgttttccttggctagttttacaattttgttggatgat |
20475632 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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