View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5369_high_6 (Length: 368)
Name: NF5369_high_6
Description: NF5369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5369_high_6 |
 | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0129 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 337
Target Start/End: Complemental strand, 10182 - 9866
Alignment:
| Q |
21 |
acatcatcacgtgacatgctagttggcagacttaccgcatcactttcatagtcagataacgcatcaccttcaaagtcgctatcttcattttcatagtcgg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10182 |
acatcatcacgtgacatgctagttggcagacttaccgcatcgctttcatagtcagataacgcatcaccttcaaagtcgctatcatcattttcatagtcgg |
10083 |
T |
|
| Q |
121 |
ataaattcagttcatactgtacatggcgaatcaccttatagtcgtcgctaacactgtcataaccaaatccatgaagtcgttccagttcaatctcataacg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10082 |
ataaattcagttcatactgtacatggcgaatcaccttatagtcgtcgctaacactgtcataaccaaatccatgaagtcgttccagttcaatctcataacg |
9983 |
T |
|
| Q |
221 |
tactgagggctctaaatcagtggggctttcaggaaggaccttaaattcatcgttagttggattccataatacaacatttgtaccactatggtaaagacaa |
320 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9982 |
tactgagggctctaactcagtaggactttcaggaagcaccttaaattcgccgttagttggattccataatacaacatttgtaccactttggtaaagacaa |
9883 |
T |
|
| Q |
321 |
acaattccgttaataac |
337 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9882 |
acaattccgttaataac |
9866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 42445937 - 42445888
Alignment:
| Q |
147 |
cgaatcaccttatagtcgtcgctaacactgtcataaccaaatccatgaag |
196 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
42445937 |
cgaatgaccttatagtcatctgtaacactgtcataaccaaatccatgaag |
42445888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 16228117 - 16228154
Alignment:
| Q |
258 |
accttaaattcatcgttagttggattccataatacaac |
295 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
16228117 |
accttaaattcatcggtagttggattccacaatacaac |
16228154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 4027516 - 4027476
Alignment:
| Q |
155 |
cttatagtcgtcgctaacactgtcataaccaaatccatgaa |
195 |
Q |
| |
|
||||||||| || ||||||| |||||||||||||||||||| |
|
|
| T |
4027516 |
cttatagtcatctctaacacggtcataaccaaatccatgaa |
4027476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University