View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5369_low_1 (Length: 238)

Name: NF5369_low_1
Description: NF5369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5369_low_1
NF5369_low_1
[»] chr6 (2 HSPs)
chr6 (131-225)||(1759080-1759174)
chr6 (8-89)||(1758957-1759038)
[»] chr5 (1 HSPs)
chr5 (158-218)||(31131422-31131482)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 1759080 - 1759174
Alignment:
Q  131 tggagtttgaatcgaatgattgtaatgttaggttttaggattgaaatgttagtgtatttgttcaacaagattcagagatcttgctgttactgttg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1759080 tggagtttgaatcgaatgattgtaatgttaggttttaggattgaaatgttagtgtatttgttcaacaagattcagagatcttgctgttactgttg 1759174  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 1758957 - 1759038
Alignment:
Q  8 gatgtgatttgcgtcgtgattgaatcgctttgatttttgagttgaaattattcttaatcatgttaataatgcttgattactg 89  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1758957 gatgtgatttgcgatgtgattgaatcgctttgatttttgagttgaaattattcttaatcatgttaataatgcttgattactg 1759038  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 31131482 - 31131422
Alignment:
Q  158 ttaggttttaggattgaaatgttagtgtatttgttcaacaagattcagagatcttgctgtt 218  Q
    |||||||||||||||| ||||||||||||||||||||  |||||| | |||||||| ||||    
T  31131482 ttaggttttaggattgtaatgttagtgtatttgttcatgaagatttaaagatcttgatgtt 31131422  T

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